| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3554 |
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| Symbol | |
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| ID | 6411228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3801011 |
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| End bp | 3802042 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642713432 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_001992529 |
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| Protein GI | 192291924 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.278452 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCGG CACCTTCGCT TGCGTCCGCA GCGGCCGCGC TCGTCTTGCT GGCGTGTGCC
GCGGCGCATG CCGAGGAAAC GCCACAACCA AAGACGGACG CTGCTGCGCC GCCGGCCGCC
GCCGAACCCC GCAAGCCTGC GCCTGCCGCG GACCAAGCCA AGCCTGCAGC TGAGCCCAAT
CAAGCCACAC CAGGCGATAA GCCGTCTGAT GCCACCGACA AGGGTGGTGA CCCCGGCACG
CGCGAGTCGA TCTGCCTGAT GATCGAGTCC GCCGCCAAGG CGCACGATTT GCCGCTGGAG
TTTTTCGCCA GGGTGATCTG GCAGGAGAGC CGGTTTCAGC CGGATGCCGT CGGGCCGGTG
ACACGCAGCG GTAAGCGCGC GCAAGGCATC GCGCAATTCA TGCCGGGCAC CGCCAGCGAG
CGCCGGCTGC TCGATCCGTT CGATCCGGTG CAGGCGCTGC CGAAGTCGGC CGAATTCCTC
AAGGAGCTGC GCGATCAGTT CGGCAATCTC GGGCTGGCGG CCGCCGCCTA CAATGCCGGG
CCGCGCCGGG TGCAGGAATG GCTCGCCGGC ACCGGCGGCA TGCCGCTGCA GACGCGGGAC
TACGTGTTTG CGATCACCGG CAGTTCAGTC GACGATTGGG CTAAAGCGGG GCGTGCCGCG
AAGCTACCAG AGGCCAAGGG CGACACCGAT TGCCGCACCT TGATGGCGCT GTTGAAGCGG
GCGCCGAACC CGTTCGTTGC CGAGCTCGAA CAACGCGTGA AGCTCGGCGC CGATCGGCCG
TGGGGCGTGC AGCTCGCCGC CGGCTTCAAT CGCAACCGGG CGCTGGCAAG CTACGCGCGG
GCGATCTCGC GGTTGAGTAC GGTGATCGGC GAGCGCGACC CGACGCTGCT GAGCGGGGTG
TTCCGCAGTC GCGGCACTCG GCCGTTCTAT CAGGTGCGGA TTGGCGCCGA GACCCGCGGC
GAAGCAGACG ATCTGTGCAA GCAGATCCGC CGGGCCGGGC AGGCGTGTCT GGTGCTGCGC
AATCGAGGCT GA
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| Protein sequence | MIPAPSLASA AAALVLLACA AAHAEETPQP KTDAAAPPAA AEPRKPAPAA DQAKPAAEPN
QATPGDKPSD ATDKGGDPGT RESICLMIES AAKAHDLPLE FFARVIWQES RFQPDAVGPV
TRSGKRAQGI AQFMPGTASE RRLLDPFDPV QALPKSAEFL KELRDQFGNL GLAAAAYNAG
PRRVQEWLAG TGGMPLQTRD YVFAITGSSV DDWAKAGRAA KLPEAKGDTD CRTLMALLKR
APNPFVAELE QRVKLGADRP WGVQLAAGFN RNRALASYAR AISRLSTVIG ERDPTLLSGV
FRSRGTRPFY QVRIGAETRG EADDLCKQIR RAGQACLVLR NRG
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