| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3541 |
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| Symbol | pleD |
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| ID | 6411215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3791121 |
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| End bp | 3792494 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713419 |
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| Product | response regulator PleD |
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| Protein accession | YP_001992516 |
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| Protein GI | 192291911 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCAGCGC GTATCTTGGT GGTCGACGAC ATCCCGGCGA ACGTCAAGCT GCTCGAAGAC
CGGTTGTCGG CCGAGTATTT CGACGTCATC ACCGCGTCGA ACGGCATTCA GGCGCTGGAG
ATCTGCCAGC GCGCCGAATG CGACATCGTG CTGCTCGACG TGATGATGCC GGACATGGAC
GGCTTCGAAG TCTGTCGCCG GCTGAAGTCG AATCCGAAGA CGCATTTCAT CCCGGTGGTG
ATGGTGACGG CGCTCGACAG CCCGGCTGAT CGCGTGCGCG GCCTTGAAGC CGGTGCCGAC
GATTTCCTCA CCAAGCCGGT GTCCGACGTC GTGCTGATCG CGCGGGTGCG GTCGCTGACG
CGGCTGAAGA TGATGACCGA CGAACTGCGG ATGCGGGCGA TCACCTCGCT CGAAATCGGC
ATGCAGGCAC CGGAGCGTGA AGCCGTCGCC GATCAAGGCA AGGGCGGCCG CATTCTGCTG
GTCGACGACC GACCGTCGTC CTACGAGCGG CTGGCGCCGC TGCTCAGCGC TGAACACGAC
GTCGATGTCG AGACCAATCC TTCCGAAGCG TTGTTCCACG CCGCTGACGG CAATTACGAT
CTGCTGATCG TGTCGCTCGG GCTGGAGAAT TTCGACGGCC TGCGGCTGTG CAGCCAAGCG
CGCTCGCTTG AGCGCACCCG GCATGTGCCG ATCCTCGCGA TCGCGGAGGC CGAGAACAAC
GCGCGGCTGC TGCGCGGGCT TGAGATCGGT GTGAACGACT ATCTGCTGCG GCCGGTCGAC
AAGAACGAAT TGATGGCGCG GGCGCGGACC CAGATCCGGC GTCGCCGCTA CACCGATCAT
CTGCGCGACA ACGTGCAGCA TTCGATCGAG ATGGCGATCA CCGACGGCCT CACCGGGCTG
CATAACCGGC GCTACATGGA GAGTCATCTG GCGACGCTGG CCGAGCAGGC CGGCGCCCGC
GGCAAGCCGC TGGCACTGAT GATCCTCGAC ATCGACTTCT TCAAGTCGAT CAACGACAGC
TACGGCCACG ATGCCGGCGA CGACGTGCTG CGCGAGTTCG CGCTTCGGAT CAAGAAATCG
ATCCGCGGCA TCGATCTCGC CTGCCGCTAT GGCGGCGAGG AGTTCGTGAT CGTGATGCCG
GAAACCGATC TGCACGTCGC CCAGATGGTG GCGGAGCGGC TCCGCCGCGC CATCGCGGGA
GAGCCGTTCG CAATCGAAAA GGGCACGCGC CGGATCGAGG TCACGATCTC GATCGGGCTG
TCGACGCTGG AGCGCAAGGG CGAGCCGATT CCCGACCTGC TGAAACGTGC CGACACAGCG
CTGTACCGCG CCAAGCACGA CGGCCGGAAT CGGGTGGTCG CCGCGGCGGC GTAA
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| Protein sequence | MSARILVVDD IPANVKLLED RLSAEYFDVI TASNGIQALE ICQRAECDIV LLDVMMPDMD
GFEVCRRLKS NPKTHFIPVV MVTALDSPAD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT
RLKMMTDELR MRAITSLEIG MQAPEREAVA DQGKGGRILL VDDRPSSYER LAPLLSAEHD
VDVETNPSEA LFHAADGNYD LLIVSLGLEN FDGLRLCSQA RSLERTRHVP ILAIAEAENN
ARLLRGLEIG VNDYLLRPVD KNELMARART QIRRRRYTDH LRDNVQHSIE MAITDGLTGL
HNRRYMESHL ATLAEQAGAR GKPLALMILD IDFFKSINDS YGHDAGDDVL REFALRIKKS
IRGIDLACRY GGEEFVIVMP ETDLHVAQMV AERLRRAIAG EPFAIEKGTR RIEVTISIGL
STLERKGEPI PDLLKRADTA LYRAKHDGRN RVVAAAA
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