| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3535 |
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| Symbol | |
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| ID | 6411209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3782801 |
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| End bp | 3785536 |
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| Gene Length | 2736 bp |
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| Protein Length | 911 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713413 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001992510 |
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| Protein GI | 192291905 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTCG TCATTGTCGA GTCGCCCGCG AAGGCCAAGA CGATCAACAA ATATCTCGGC
TCGTCCTACG AGGTTCTGGC CTCGTTCGGG CACGTGCGCG ACTTGCCGGC GAAGAACGGA
TCGGTCGACC CGGACGCCGA CTTCCAGATG ATCTGGGAAG TCGATCCGAA AGCCGCGAGC
CGGCTCAACG ACATCGCCAA AGCTCTGAAG GGTGCCGACA AACTGATCCT CGCCACCGAC
CCTGATCGCG AGGGCGAGGC GATCTCCTGG CATGTGCTGG AGGTGATGAA GCAGAAGCGT
GCGCTGAAAG ACCAACAGGT CGAGCGCGTC GTGTTCAACG CCATCACCAA GCAGTCGGTC
ACCGACGCGA TGAAGCACCC GCGCCAGATC GATGGTGCGC TGGTCGACGC CTATATGGCG
CGCCGCGCTC TCGACTACCT GGTCGGGTTC ACCCTCTCCC CGGTGCTGTG GCGCAAGCTG
CCCGGCGCCC GCTCCGCCGG CCGGGTGCAG TCGGTGGCGC TGCGGCTGGT GTGCGACCGC
GAGACGGAAA TCGAGAAATT CGTCCCCCGC GAGTACTGGT CGCTGGTCGC CACCATGGCG
ACACCACGCG GCGAGACCTT CGAGGCCCGC CTGGTCGGCG CCGACGGCAA GAAGATCCAG
CGGCTCGACA TCGGCACCGG CGCCGAGGCG GAAGACTTCA AAAAGGCGAT CGAAGCGGCG
AACTTCCGCG TCGCCACCGT CGAAGCCAAG CCGGCCCGCC GCAACCCCTA CGCCCCCTTC
ACCACCTCGA CGCTGCAGCA GGAGGCCAGC CGTAAGCTCG GCTTCGCGCC GGCGCACACC
ATGCGGGTGG CGCAGCGGCT GTATGAAGGT GTCGACATCG GCGGCGAGAC CGTCGGACTC
ATTACATATA TGCGTACCGA CGGCGTGCAG ATCGACTCGT CCGCCATCAC CCAGGCGCGC
AAGGTGATCG CCGAGGATTT CGGCAACGCC TATGTGCCGG ACGCACCGCG GCAATACACC
GCAAAGGCCA AGAACGCGCA GGAAGCCCAC GAAGCGATCC GCCCGACCGA CCTGTCGCGC
AGGCCCTCCG ACGTCAGCCG GAACCTCGAT TCCGACCAGG CCCGGCTGTA CGAGCTGATC
TGGATCCGCA CCGTCGCCAG CCAGATGGAA TCCGCCGAGC TCGAGCGCAC CACCGTCGAC
ATCGAGGCGA AAGCCGGGTC GCGGGTGCTG GAGCTGCGCG CCACCGGCCA GGTGGTGAAA
TTCGACGGCT TCCTCGCCGC CTATCAGGAA GGCCGCGACG ACGATTCCGA GGACGAGGAT
TCCCGCCGCC TCCCCGCCAT GAGCGAGAAC GAGGCGCTGA AGCGCGAGGC CCTCGCGGTC
ACGCAGCATT TCACCGAGCC GCCGCCGCGG TTCTCCGAAG CGTCTCTGGT GAAGCGGATG
GAAGAGCTCG GCATCGGCCG GCCCTCGACC TACGCCTCGA TCCTGCAGGT ACTGAAGGAT
CGCGGCTACG TCCGGCTGGA AAAGAAGCGG CTGCACGGCG AGGACAAGGG CCGCGTCGTC
GTCGCGTTTC TCGAGAGCTT CTTCACCCGC TACGTCGAAT ACGACTTCAC CGCGGGACTC
GAAGAAGACC TCGACCGCAT CTCCAATAAT GAAGTGTCCT GGAAACAGGT CCTGAGCGAC
TTCTGGCGCG ACTTCATCGG CGCGGTCGAC GAGATCAAGG ACTTGCGCGT CGCCCAGGTG
CTCGACGTGC TCGACGAGAT GCTCGGCCCG CACATCTATC CGGCCCGCGA GGACGGCGGC
GATCCGCGGC AGTGCCCGAG CTGCGGCAAC GGCCGGCTCA ACCTGAAGGC CGGCAAGTTC
GGCGCCTTCG TCGGCTGCAC CAACTATCCG GAATGCCGCT ACACCAGGCC GCTCGCTGCC
GATGGCGGCG CCGATGCCGA TCGCGTGCTC GGCACCGATC CGGACACCGG CCTCGAGGTC
GCGGTGAAGT CCGGCCGGTT CGGGCCCTAC ATCCAACTCG GCGAGGCCAA GGATTATGGC
GAGGGCGAGA AGCCCAAGCG CGCCGGCATC CCGAAGGGCA CCTCGCCGTC CGATGTCGAA
CTCGACGTTG CGCTGAAGCT GCTGGCGCTG CCGCGCGAAG TCGGCAAACA TCCGGAGAGC
GGCCAACCGA TCAAGGCCGG CATCGGCCGG TTCGGGCCTT ACGTGCAGCA CGAGAAGACC
TATGCCAGCC TCGAAGCCGG CGACGACGTG CACACCATCG GTCTGAATCG CGCGGTGACG
CTGATCGCCG AGAAGGTCGC CAAGGGTCCG AGCAAGGGCC GGTTCGGCGC CGATCCCGGC
AAGGCGCTGG GCGATCACCC GACGCTCGGC GCGGTCGCGG TCAAGAAGGG CCGCTACGGC
GCCTATGTCA CCGCCGGCGG CGTCAACGCC ACGATCCCGA ACGACAAGAC CGACGAGACC
ATCACGTTGC CCGAGGCGAT CGTGCTGCTC GACGAGCGCG CCGCCAAGGG CGGCGGCAAA
GCCAAGAAGG CGCCGGCCAA GAAGTCTGCT GCCAAGAAGG CTTCCGCCGA CGGTGAGGCC
AAGCCGGTGA AGAAGGCCGC CGCCAAGAAG GCCAAGCCGA AGGCCGAAGG CGCCGCCGCC
AGCAAGGCGC GCGCACCGGT GGCGGCAAAG ACCGCGGCGA AAAAGGCCGC CAAGCCTAAA
GACGCGGCCA AGAGCAGCGC CGCCAAGAAC GGATAG
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| Protein sequence | MNLVIVESPA KAKTINKYLG SSYEVLASFG HVRDLPAKNG SVDPDADFQM IWEVDPKAAS
RLNDIAKALK GADKLILATD PDREGEAISW HVLEVMKQKR ALKDQQVERV VFNAITKQSV
TDAMKHPRQI DGALVDAYMA RRALDYLVGF TLSPVLWRKL PGARSAGRVQ SVALRLVCDR
ETEIEKFVPR EYWSLVATMA TPRGETFEAR LVGADGKKIQ RLDIGTGAEA EDFKKAIEAA
NFRVATVEAK PARRNPYAPF TTSTLQQEAS RKLGFAPAHT MRVAQRLYEG VDIGGETVGL
ITYMRTDGVQ IDSSAITQAR KVIAEDFGNA YVPDAPRQYT AKAKNAQEAH EAIRPTDLSR
RPSDVSRNLD SDQARLYELI WIRTVASQME SAELERTTVD IEAKAGSRVL ELRATGQVVK
FDGFLAAYQE GRDDDSEDED SRRLPAMSEN EALKREALAV TQHFTEPPPR FSEASLVKRM
EELGIGRPST YASILQVLKD RGYVRLEKKR LHGEDKGRVV VAFLESFFTR YVEYDFTAGL
EEDLDRISNN EVSWKQVLSD FWRDFIGAVD EIKDLRVAQV LDVLDEMLGP HIYPAREDGG
DPRQCPSCGN GRLNLKAGKF GAFVGCTNYP ECRYTRPLAA DGGADADRVL GTDPDTGLEV
AVKSGRFGPY IQLGEAKDYG EGEKPKRAGI PKGTSPSDVE LDVALKLLAL PREVGKHPES
GQPIKAGIGR FGPYVQHEKT YASLEAGDDV HTIGLNRAVT LIAEKVAKGP SKGRFGADPG
KALGDHPTLG AVAVKKGRYG AYVTAGGVNA TIPNDKTDET ITLPEAIVLL DERAAKGGGK
AKKAPAKKSA AKKASADGEA KPVKKAAAKK AKPKAEGAAA SKARAPVAAK TAAKKAAKPK
DAAKSSAAKN G
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