| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3455 |
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| Symbol | |
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| ID | 6411129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3698789 |
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| End bp | 3699967 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713334 |
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| Product | ribonuclease D |
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| Protein accession | YP_001992431 |
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| Protein GI | 192291826 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0111852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGA TTTCAACTTC CGAGCAGCTT GCCGACGCCT GCGCCCGTCT CGCCCGCCAT
CCCGTCATCA CGGTCGACAC CGAATTTCTG CGCGAGACGA CGTTCTATCC GCTGCTCTGC
GTGGTGCAGA TGGCGAGCGC CGAAGAAGCG CTGGTGATCG ACGCGCTGGC CGACGGCATC
GACCTGAAGC CGTTCTTCGA CCTGATGGCG AACGAGCAGG TGCTGAAGGT CTTCCACGCC
GCCCGTCAGG ACATCGAAAT CGTCTGGCAC CGGGCCGGCA TCGTGCCGCA TCCGATCTTC
GACACCCAGG TCGCCGCGAT GGTCCTCGGC TATGGCGACA GCATCGCCTA CGACCAGCTC
GTCGAGCGCA TCACCGGCCA CCGTCCGGAC AAGACCCACC GCTTCACCGA CTGGTCGCGC
CGTCCGCTCA CCCAGGAGCA GGTTCACTAC GCGGTCTCCG ACGTCACTCA TCTGCGCGAC
GTGTTCGCCG CGCTCGATGC CGACCTGAAG AAGCGCGGCC GCAGTGATTG GGTCAGCGAG
GAGATGGAAG TCCTGACCTC GCCGAGCACC TACGACGTGC ATCCGGAGCG TGCCTGGGAG
CGGCTGAAGA CACGCGTGCG CAAGCCCAAA GAGCTTGCAG TGCTGATGGA GATCGCCGCC
TGGCGCGAGC AGGAAGCACA GAGCCGCGAC GTGCCGCGCT CGCGCGTGCT CAAGGACGAT
GCGCTCGGCG ACATCGCCAC CCACGCGCCG ACCTCGTTGG AAAAGCTCGC CAACCTGCGC
TCGCTGCCGA AGGGGTTCGA TCGCTCGAAA TGGGGCACCG AGATCGTCGC AGCGGTGCAG
CGCGGGCTCG CGCGCGATAT GGCGACGCTG CCGAAGATCG ATAAGCCGCG CAACAACTCC
AACGGCACCG CGATCGTTGA ACTGCTCAAA GTGCTGCTGC GGATGACCTC GGAGCGCCAC
GCCGTCGCCG CCAAGGTGAT CGCGACCGTC GACGACCTCG AACAGATCGC GGCCGACGAC
AATGCCGATG TCGGCGCACT GCGCGGCTGG CGCCGCGAAC TGTTCGGCGA GGCTGCGCTC
GCCCTGAAGC ACGGCCGGCT GTCGCTCGCG ATCGAACGCG GCAAGGTCAT TCAGGTCGAC
CGCAATGGCG CGACGGCGGG GACAACCGCG GGTCAATGA
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| Protein sequence | MDLISTSEQL ADACARLARH PVITVDTEFL RETTFYPLLC VVQMASAEEA LVIDALADGI
DLKPFFDLMA NEQVLKVFHA ARQDIEIVWH RAGIVPHPIF DTQVAAMVLG YGDSIAYDQL
VERITGHRPD KTHRFTDWSR RPLTQEQVHY AVSDVTHLRD VFAALDADLK KRGRSDWVSE
EMEVLTSPST YDVHPERAWE RLKTRVRKPK ELAVLMEIAA WREQEAQSRD VPRSRVLKDD
ALGDIATHAP TSLEKLANLR SLPKGFDRSK WGTEIVAAVQ RGLARDMATL PKIDKPRNNS
NGTAIVELLK VLLRMTSERH AVAAKVIATV DDLEQIAADD NADVGALRGW RRELFGEAAL
ALKHGRLSLA IERGKVIQVD RNGATAGTTA GQ
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