| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3428 |
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| Symbol | |
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| ID | 6411102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3670049 |
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| End bp | 3673279 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642713308 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_001992405 |
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| Protein GI | 192291800 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTCT CCAAGTTCTT CATCGATCGT CCGATCTTCG CCGGCGTGCT GTCAGCGGTG
ATCTTCCTCG CCGGCCTGTT GTCGATGCCG GTGCTGCCGA TCTCCGAATA TCCCGAAGTG
GCGCCGCCGA CGATCGTGGT GTCGGCGCAA TATCCCGGCG CCAATCCCAA GGTAATCGCC
GAGACGGTGT CGACGCCGAT CGAGGAGCAG ATCAATGGCG TCGAGAACAT GCTCTACATG
AGCAGCCAGG CGACCACCGA CGGCAAGATG ACGCTCAACG TCACTTTCCG CCTCGGCACC
GACCCGGACA AGGCGCAGCA ACTGGTCCAG AACCGCGTCT CGCAGGCCGA ACCGCGGTTG
CCGGCGGAAG TGCGCGCGCT CGGCATCACC ACCATCAAGA GCGCGCCCGA CCTGACCATG
GTCGTGCATC TGATGTCGCC GAACGACCGC TACGACATGA CGTACTTGCG CAACTATGCG
GTGCTGAACG TCAAGGACCG GCTGGCGCGA ATTCCCGGCG TCGGCCAGGT GCAATTGTTC
GGCTCGGGCG ACTATTCGAT GCGGGTCTGG CTCGATCCGC AGAAGGTTGC CGAGCGCGGC
CTGTCGCCGG CCGACGTGGT GCGCGAGATC CGCGCCCAGA ACGTCCAGGC CGCGGCCGGG
CAGGTCGGCA GCTCGCCGGG CGAGCCGGGG CTCGATCTGC AGCTCTCGGT CAATGCGCAG
GGAAGGCTGC AGACCGAAGA GGAATTCGGC GAGATCATCG TCAAGAATGG TGCGGGCGGC
GAGGTGGTAC GGCTGCGCGA CGTCGCACGG ATCGAACTCG GCGCCGCCGA CTACGCGCTG
CGCTCGCTGC TCAACAACAA GTCTGCAGTT GCGATCCCGA TCTTCCAGTC GCCGGGCTCC
AACGCGATCC AGATCTCCGA CAACGTCCGT GCGACGATGA AGGAGCTGAA GCAGAACATG
CCCGACGGCG TCTCCTACGA CATCGTCTAT GACCCGACCC AGTTCGTCCG CGCCTCGATC
GAGGCGGTGA TCCACACGCT GCTCGAAGCG ATCGCGCTGG TGGTGCTGGT GGTGATCATG
TTCTTGCAGA CCTGGCGGGC GTCGATCATT CCGCTGATCG CGGTGCCGGT GTCGGTGGTC
GGCACCTTCG CGGTGATGCA TGTGTTCGGA TTTTCGATCA ACGCGCTGAC CTTGTTCGGC
CTGGTGCTGG CCATCGGCAT CGTGGTCGAC GACGCCATCG TCGTGGTTGA GAACGTCGAG
CGCAACATCG AGCGCGGGCT TGGGCCGAAG GACGCGGCCT ATCAGGCGAT GCGCGAAGTC
ACCGGACCGA TCATCGCGAT CGCACTGGTG CTGGTCGCGG TGTTCGTGCC GCTCGCCTTC
ATCACCGGTC TCACCGGGCA GTTCTATAAG CAGTTCGCGC TGACGGTGGC GATCTCGACG
GTGATCTCCG CGTTCAATTC GCTGACGCTG TCGCCGGCGC TCGCGGCGCT GCTGCTGAAG
GGCCACGACG CGCCGAAGGA TGCGTTGACG CGCTTCATGG ACAAGACGCT CGGCTGGTTC
TTCGTCCGCT TCAACCGCTT CTTCGCCCGC AGCTCGGAGG CTTATGGTCG CGGCGTCAAG
CGCGTGGTAT CGCGCCGCGC GGTCGGCATG GGGCTTTATC TGCTGCTGGT CGGAGCCACT
TTCTATCTGT TCCACGCGGT GCCGAGCGGC TTCGTGCCGG GACAGGACAA GCAGTATCTG
GTCGGCTTCG CGCAGCTCCC GGACGGCGCC ACGCTGGACC GCACCGAGGA TGTGATCCGG
CGGATGGGCG AGATCGCCCA GCAGGAGCCG GGAGTGGAGA ACTCGATCCA GTTTCCCGGC
CTGTCGATCA ACGGCTTCAC CAACTCGTCG AACTCCGGCA TCGTGTTCAT CGGCCTGAAG
TCGTTCGACG AGCGCAAGGA CAAGTCGCTC AGCGGCAACG CGATCGCGAT GTCGCTGAAC
AAGAAGTTCG CCGGCATCCA GGACGCGTTC ATCGCGATGT TTCCGCCGCC GCCGGTCTCC
GGCCTTGGCA CCATCGGTGG TTTCAAGCTG CAGATCGAGG ACCGTGCCGG GCTCGGCTAT
GAGGCGCTGA ACGACGCCAC CAAGGCGTTC GTCGCCAAGG CGAGCGCGCA AAAGGAGCTG
GCCGGTCTGT TCACCAGCTA TCAGATCAAC GTGCCGCAGC TCTATGCCGA CGTCGATCGC
ACCAAGGCCC GGCAGCTCAA TGTGCCGGTG ACCTCGATCT TCGAGACCAT GCAGATCTAT
CTCGGCTCGC TCTACGTCAA CGACTTCAAC AAGTTCGGCC GTACCTATTC GGTGCGGGTG
CAGGCCGACG CCAAGTTCAG GGCGCGGGCG GACGACATCG GTCAGCTCAA GGTGCGCTCG
GACTCCGGCG AAATGATCCC GCTGTCGACG CTGCTGCGGG TCAAGGAGAG CGCGGGGCCG
GAGCGGGCGA TGCGCTACAA CGGCTTCCTC ACCGCCGATC TCAGCGGCGG CGCGGCGCCC
GGCTTTTCGA CCGGGCAGGC GCAGGCTGCG ATCGAGCGCG TTGCCAAGGA AACGCTGCCG
AAGGGCGTGT CCTACGAATG GACCGAGCTG ACCTATCAGG AGATCATCGC CGGCAATTCG
TCGCTGATCG TGTTCCCGGT GGCGCTGCTG CTTGTGTTCC TGGTGCTGGC CGCGCAGTAC
GAAAGCCTGA CGCTGCCGCT GTCGATCATC ATGATTGTGC CGATGGGCCT GCTCGCCGCA
ATGTTCGGCG TTTGGGTCAG CAAGGGTGAC AACAACGTGT TCACCCAGAT TGGGTTGATC
GTGCTGGTCG GCCTGTCAGC CAAGAACGCC ATCCTGATCG TTGAGTTCGC GCGCGAACTG
GAGTTCGCTG GGCGCAAGCC GATCCAGGCG GCGATCGAGG CCAGCCGGTT GCGGCTGCGG
CCGATCCTGA TGACGTCGAT GGCGTTCATC ATGGGCGTGG TGCCGCTGGT GACCTCGACC
GGCGCCGGCT CGGAGATGCG CCACGCCATG GGCGTTGCGG TGTTCGCCGG CATGATCGGC
GTCACTGCGT TCGGCATCTT CTTCACGCCG ATGTTCTATG TGCTGCTGCG TGCGCTCGCC
GGCAACCGGC CGCTGACGCA GCACGGCGAG GGCACGGTCG ACCAAGACGC GCCGTTGGCG
GCGCACGAGC CTGAGCCACG GCAGCAGGCG GTCGTCGGAT CGCATCCATG A
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| Protein sequence | MNFSKFFIDR PIFAGVLSAV IFLAGLLSMP VLPISEYPEV APPTIVVSAQ YPGANPKVIA
ETVSTPIEEQ INGVENMLYM SSQATTDGKM TLNVTFRLGT DPDKAQQLVQ NRVSQAEPRL
PAEVRALGIT TIKSAPDLTM VVHLMSPNDR YDMTYLRNYA VLNVKDRLAR IPGVGQVQLF
GSGDYSMRVW LDPQKVAERG LSPADVVREI RAQNVQAAAG QVGSSPGEPG LDLQLSVNAQ
GRLQTEEEFG EIIVKNGAGG EVVRLRDVAR IELGAADYAL RSLLNNKSAV AIPIFQSPGS
NAIQISDNVR ATMKELKQNM PDGVSYDIVY DPTQFVRASI EAVIHTLLEA IALVVLVVIM
FLQTWRASII PLIAVPVSVV GTFAVMHVFG FSINALTLFG LVLAIGIVVD DAIVVVENVE
RNIERGLGPK DAAYQAMREV TGPIIAIALV LVAVFVPLAF ITGLTGQFYK QFALTVAIST
VISAFNSLTL SPALAALLLK GHDAPKDALT RFMDKTLGWF FVRFNRFFAR SSEAYGRGVK
RVVSRRAVGM GLYLLLVGAT FYLFHAVPSG FVPGQDKQYL VGFAQLPDGA TLDRTEDVIR
RMGEIAQQEP GVENSIQFPG LSINGFTNSS NSGIVFIGLK SFDERKDKSL SGNAIAMSLN
KKFAGIQDAF IAMFPPPPVS GLGTIGGFKL QIEDRAGLGY EALNDATKAF VAKASAQKEL
AGLFTSYQIN VPQLYADVDR TKARQLNVPV TSIFETMQIY LGSLYVNDFN KFGRTYSVRV
QADAKFRARA DDIGQLKVRS DSGEMIPLST LLRVKESAGP ERAMRYNGFL TADLSGGAAP
GFSTGQAQAA IERVAKETLP KGVSYEWTEL TYQEIIAGNS SLIVFPVALL LVFLVLAAQY
ESLTLPLSII MIVPMGLLAA MFGVWVSKGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
EFAGRKPIQA AIEASRLRLR PILMTSMAFI MGVVPLVTST GAGSEMRHAM GVAVFAGMIG
VTAFGIFFTP MFYVLLRALA GNRPLTQHGE GTVDQDAPLA AHEPEPRQQA VVGSHP
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