| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3425 |
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| Symbol | |
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| ID | 6411099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3666017 |
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| End bp | 3668344 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642713305 |
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| Product | GAF sensor signal transduction histidine kinase |
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| Protein accession | YP_001992402 |
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| Protein GI | 192291797 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0531418 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCGC GATCAGACCC CGGCCAGCCC ATGGCATCCG CGACCGACCC GAGCGGCCGA
CTGGCGCTCG ATCTGACCGA ATGCGACCGT GAGCCGATCC ACATTCCCGG CGCGATCCAG
CCGCACGGCT ATCTGTTCGT GGTGAGCGAG ACCGATCTAC GGATCGCCTC AGTCAGCGCC
AATGTGGAGG ATCTGCTGAG GCAGCCCCCT GCTTCGCTGC TGAATGTGCC GATCGCGCAT
TACCTCACGG CTGCCAGTGC CGCACGCCTG ACCCACGCGC TTCACGGCGG CGACCCGGCC
GCTATCAATC CAATCCGGCT CGACGTGGTC ACACCGGACG GGGAGCGCGC ATTCAACGGG
ATTCTGCACC GCCACGACTC GATCGTCATT CTCGAATTGG AGCCGCGTGA CGAGTCGCGC
TACACAAACG AGTTCTTCCG CAGCGTCCGC GTCGCGATCC GCCGCCTGCA GACGGCAGCC
GATTTGCCGA CCGCCTGCTG GATCGCGGCG AGCGAAGTCC GCCGCATCAC TGGCTTCGAC
CGGATCAAGG TGTACCAGTT TGCCGCCGAT TGGAGCGGTC AGGTGATCGC CGAAGACCGC
GACAGCGGAA TCCCGTCCCT GCTCGATTTT CACTTCCCAT CGTCCGACAT ACCGGCTCAA
TCCCGCGCGC TGTACACTAT CAACCCCGTT CGCATCATAC CGGACATCGG ATATCGCCCC
TCGCCGCTGG TGCCCGACAT CAATCCGCGA CTTGGCGGCC CAATCGATCT CAGCTTCTCG
GTGCTGCGCA GCGTGTCGCC GACCCATCTT GAGTACATGG TCAACATGGG CATGCACGCG
GCGATGTCGA TTTCAATCGT CCGCGACAAT CGCCTGTGGG GCATGATCTC CTGTCACAAT
CTGACGCCGC GCTTCGTTTC CTACGAAGTC CGGCAGGCAT GCGAGCTGAT CGCCCAGGTG
CTGACATGGC AGATCGGAGT GCTGGAAGAA GCCGAGATCG TCCGCCACAG CGTTCGCATG
CGCGCTATAC AGAACCGGCT GCTGCACGAG CTTGGAGACG AGCAAGGCCT CACGGCCGGC
CTGAGCCGCG TCAGCGAAGA GATGCTGGCA TTGATGGGTG CATCCGGCTT CGCGCTGTGC
AGCTTCGACG GCGTCGCCGC TTTCGGCCGA ACACCATCCG ATGACGAAAT CCAGGCGCTG
GCGTCGTGGC TGTCTCACCG TGAGTCACGC GGTATCTTTC AGACCCAGCA GCTCTCGGCC
AGCTTCCCCG AGGCCGAAGT GTACTCGGAC ATCGCGAGCG GACTGCTCGC CGTGCCGCTG
GGGCGGGCGT CGACCACGCT GATGCTGTGG TTTCGACCGG AGGTGGCGCA GACCGTCACT
TGGGGCGGCG ACCCGCACAA GCCGGTGCAG ATCGGCCCCC GCGGCAGGCG GCTGCAGACC
CGTGCTTCGT TCGAGGCTTG GCGCGAAGAA GTCCGCGACC GATCTCGCCC ATGGCGCAGC
CACGAAATTG TCGCGGCGGA GGAGATCCGC GATCTCGTGG TCGATGTCAT TCTCGGCCGC
GCCGAGGAAC TGGAGAATGC CAACCGCGAG CTGTCGCGCA GCAACGACGA ACTGGAGTCG
TTCGCCTATG TGGCGGCCCA CGATCTCAAG GAGCCGCTGC GCCACATCGA GGCGTTCGCC
GGACTGTTGA ACGATCTGCT GCTACCGGAG GCGCGAAGCC GACTGAGCCT AATGGTGAAC
GGCATCGAGG CATCGTCGCG CCGGCTGCGC GCGCTGATCA ATGATCTTGC CGAGTACTCC
AGGATCGGGC GGCAGGCCCG GCCGCTGCAG CCGGTCGACC TCAATCAGAT TCTGACCGAG
GTGCTGTCCG ATCTGAAGCC GATGCTGCAG GATGCACGCG CCGAGGTCGT CTCGGAGCCC
CTTCCCACCG TGCTGTGCGA CGGCAGCCAG ATTCGGCAAT TGCTGCAGAA CCTGATCAGC
AATGCGGTGA AGTATCGCGA TGCCGAGCGG CTGCCTCACG TGACCATCGC GGCGACGATC
GACAGCCCGC CGCCGGCGGC GCCTGCCGGC GCGAACGTCC GGAGAGCACG CATCACGATC
GCCGACAACG GAATCGGTTT CGACGAGCAA TACCGCGAGC AGATCTTCGA GCCGTTCCAG
CGGCTCCACG GTCCGGACGA ATATCAAGGC ACTGGCATCG GGCTGGCGAT CTGCCGCAAG
ATCGTCCATC GTCACGGCGG CACGATCTCC GCGACGAGCC GTGTCGGAGA AGGATCGGTG
TTCACCTTCA CCCTTCCCTT GTGCGATCAG GACGCGGCGG AGAGCTAA
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| Protein sequence | MSSRSDPGQP MASATDPSGR LALDLTECDR EPIHIPGAIQ PHGYLFVVSE TDLRIASVSA
NVEDLLRQPP ASLLNVPIAH YLTAASAARL THALHGGDPA AINPIRLDVV TPDGERAFNG
ILHRHDSIVI LELEPRDESR YTNEFFRSVR VAIRRLQTAA DLPTACWIAA SEVRRITGFD
RIKVYQFAAD WSGQVIAEDR DSGIPSLLDF HFPSSDIPAQ SRALYTINPV RIIPDIGYRP
SPLVPDINPR LGGPIDLSFS VLRSVSPTHL EYMVNMGMHA AMSISIVRDN RLWGMISCHN
LTPRFVSYEV RQACELIAQV LTWQIGVLEE AEIVRHSVRM RAIQNRLLHE LGDEQGLTAG
LSRVSEEMLA LMGASGFALC SFDGVAAFGR TPSDDEIQAL ASWLSHRESR GIFQTQQLSA
SFPEAEVYSD IASGLLAVPL GRASTTLMLW FRPEVAQTVT WGGDPHKPVQ IGPRGRRLQT
RASFEAWREE VRDRSRPWRS HEIVAAEEIR DLVVDVILGR AEELENANRE LSRSNDELES
FAYVAAHDLK EPLRHIEAFA GLLNDLLLPE ARSRLSLMVN GIEASSRRLR ALINDLAEYS
RIGRQARPLQ PVDLNQILTE VLSDLKPMLQ DARAEVVSEP LPTVLCDGSQ IRQLLQNLIS
NAVKYRDAER LPHVTIAATI DSPPPAAPAG ANVRRARITI ADNGIGFDEQ YREQIFEPFQ
RLHGPDEYQG TGIGLAICRK IVHRHGGTIS ATSRVGEGSV FTFTLPLCDQ DAAES
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