Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3393 |
Symbol | |
ID | 6411067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3631744 |
End bp | 3633375 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642713273 |
Product | protein of unknown function DUF935 |
Protein accession | YP_001992370 |
Protein GI | 192291765 |
COG category | [S] Function unknown |
COG ID | [COG4383] Mu-like prophage protein gp29 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.219922 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGACG CCCCGATCAT CTACGGTCCC GACGGCCAGC CTATCCGTCG CGAGGTCCTG ACCGCCTCTG TCGCCGGTCC GACCGTCACC GGCGTGCGCT CGCCGTTCGG CGCCTATCCG GCCGACGGGC TTAATCCGCG GCGACTGGCC TCGATCCTGC GCGAGGCCGA TCAGGGCGAC CCGATCAGTT ATTTCGAGCT GGCGGAGCAG ATCGAGGAAC GAGACCCGCA CTATCTCGGC GTGCTGTCGA CGCGCAAGCG CAGCGTCTCT CAGCTCGATA TCACAGTGGA ATCGGCCGAC GATACGCCCG AAGGAAAGTC GATCGCCGAC ATGGTCGAGG CCTGGCTGCG GCGCGACGAA TTGCAGTTCG AGCTGTTCGA CATTCTCGAC GCGATCGGCA AGGGCTGGAG CCAGACCGAA ATCATCTGGG ACACATCCGA GGGCCAGTGG CAGCCGAAGC GGCTGGAGTG GCGCGACCCT CGTTGGTTCA GGCCGGATCA GCGCGACGGT GTGACGCCGC TACTGCGGAT CGACGCCGGC GACGCCTTCG CGCAGGGGCT ACCACCGGCC GGACCGAACG GCGGCGGCTA CGCGCCATTG CCGCCGTTCA AGTTCATCTC GGCGGTGATC CGTGCCAAGA GCGGCCTTCC GGTCCGCTCG GGCCTCGCGC GGCTGGCGTG CTGGTCATGG ATGTTCAAGG CGTTCACGCA GCGTGATTGG GCTGTGTTCA CGCAGACGTT CGGCCAGCCG GTGCGGGTCG GCAAGTATCC GGCTGGATCG TCCGAGAAGG ACAAGGACAC GCTGTTCCGC GCCGTCGCCA ATATCGCCGG CGACTGCGCG GCGATCATTC CGGAATCGAT GCTGATCGAG TTCATTGAGT CCGCAAACGT CGGTTCAAGC CATCAGCTCT ACAAGGAGCG CGCGGACTGG CTCGATCAGC AGATGTCCAA GGCCGTGCTT GGCCAGACCG CCACCACCGA CGCGATTGCC GGCGGCCACG CGGTCGGTCA GGAGCATCGG CAGGTGCAGG AGGATATCGA GACCGCCGAC GCGAAGGCGC TGGCGGCGAT CATCAACCGC GACCTCGTGC AGTCCTGGGT GCAGCTCGAA CACGGGCCGC AGAAGGTCTA TCCGCGCCTG CGGATCGGCC GGCCAGAGAG CAAGAACGTG ACGCAGATCC TCGACGGTAT CAGCCGCGGC GTGCCGATGG GGATGGCGGT CGAAAAGAGC TACATGAACG ATCTGCTCGG CATCCCGGTG CCAAGCCCCG GCGCGGACGG CCGCATGCCG GAGCTGCTGA CGCCCTCGGC GTCGGCGTCG CCGTTCGGAT CGATGTTTCC CTCGGCATCA CCTCAGCAGC GCGCGCTCGC TGCGGCCGAG ATGATCATGC ACGACGTGCG CGATCCGATC GCTGTGCTAT CCGATCAGGC CGCACGACTA TGCGCGCCGG GAAGCGATGC GCTGGTCGAC GAAGTGCGCG GCGTGATCGA AACATCGACG TCGCTGCAGC AGGTGCAGGA GAAGCTGCGC GCGCTGAAGC CGGGCGCCGC CGAAGCACAG ATGGCCGGGC TGATGCGGAT GGCGCGGGTG ATCGCGAATC TGACCGGCCG CGCCAGCATT CCCGATGCTT AA
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Protein sequence | MADAPIIYGP DGQPIRREVL TASVAGPTVT GVRSPFGAYP ADGLNPRRLA SILREADQGD PISYFELAEQ IEERDPHYLG VLSTRKRSVS QLDITVESAD DTPEGKSIAD MVEAWLRRDE LQFELFDILD AIGKGWSQTE IIWDTSEGQW QPKRLEWRDP RWFRPDQRDG VTPLLRIDAG DAFAQGLPPA GPNGGGYAPL PPFKFISAVI RAKSGLPVRS GLARLACWSW MFKAFTQRDW AVFTQTFGQP VRVGKYPAGS SEKDKDTLFR AVANIAGDCA AIIPESMLIE FIESANVGSS HQLYKERADW LDQQMSKAVL GQTATTDAIA GGHAVGQEHR QVQEDIETAD AKALAAIINR DLVQSWVQLE HGPQKVYPRL RIGRPESKNV TQILDGISRG VPMGMAVEKS YMNDLLGIPV PSPGADGRMP ELLTPSASAS PFGSMFPSAS PQQRALAAAE MIMHDVRDPI AVLSDQAARL CAPGSDALVD EVRGVIETST SLQQVQEKLR ALKPGAAEAQ MAGLMRMARV IANLTGRASI PDA
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