| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3287 |
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| Symbol | |
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| ID | 6410957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3537238 |
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| End bp | 3539331 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642713163 |
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| Product | NADH dehydrogenase subunit L |
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| Protein accession | YP_001992264 |
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| Protein GI | 192291659 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
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| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.33354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCAGG CTATCGTATT CCTGCCGCTT GTCGGCGCGC TGATCGCCGC CGTCATTGCG
CTGGTGGGCG CTCATGCCCG CAACCCGAGC GGTGACACCG TTGAACATCA CGACGATCAC
GGCCATGGTC ACGACCACGC TGGGCACGGC CACGACGCTC ACGCGCATGC CGCGCATGGT
CATGATGATC ACGCTCATGA CGATCACGCC CACGGCCCGG TCGAGCCGGC CGCGGCCGGC
TCGCGTCTCG CCGAGATCGT CACCACGACG CTGCTGCTGA TCTCCTGCGC GCTGTCCTGG
GTGACGCTGG TCGAAGTCGG CTTCATGCAT CACGATTCAC GCGTGGCGTT GTTGCCGTGG
ATCAATTCCG GCGAGCTGCA GGTCGCCTGG GCGCTGCGCG TCGACACGCT GACCGCCGTG
ATGCTGGTGG TGGTGACGAC GGTGTCGTCG CTCGTCCACC TGTATTCGAT CGGTTACATG
CACGAGGACC CGCATCGGCC GCGGTTCTTC GGCTATCTGT CGCTGTTCAC CTTCGCGATG
CTGATGCTGG TGACCGCCGA CAACCTGCTG CAGCTGTTCT TCGGCTGGGA AGGCGTCGGT
CTGGCGAGCT ATCTGCTGAT CGGGTTCTGG TACCAGAAGC CATCGGCCAA CGCCGCCGCC
ATCAAGGCCT TCGTGGTCAA CCGCGTCGGC GACTTCGGCT TTCTGCTCGG CATCTTCACG
ATCTTCGTGC TGGTCGGCTC GACCGATTTC GACACCATCT TCTCGGCGGC GCCTAGCCTC
ACCGGCAAGA CGATCAACTT CTTCGGCTGG CACGCCGACG CCCTGACGCT GGCCTGCCTG
ATGCTGTTCA TGGGCGCGAT GGGCAAGTCG GCGCAGTTCC TGTTGCACAC CTGGCTGCCC
GACGCGATGG AAGGTCCGAC ACCGGTGTCG GCTCTGATCC ACGCCGCGAC CATGGTCACC
GCCGGCGTGT TCATGGTGGC ACGGATGTCG CCGTTGTTCG AACTCGCCCC GAATGCCCAG
GCCGTGGTGA TGTTCTTCGG CGCCACCACC GCGTTCTTCG CGGCAACGAT TGGTCTGGTC
CAGAACGACA TCAAGCGAAT TGTGGCGTAC TCGACCTGTT CGCAGCTCGG CTACATGTTC
GTGGCGATGG GGGCGGGCGC TTACTCGGTC GGCATGTTCC ACCTGTTCAC GCACGCCTTC
TTCAAGGCGC TGCTGTTCTT GGGTGCCGGC TCGGTGATCC ACGCGATGCA TCACGAGCAG
GACATCCGCA ACATGGGTGG CCTGAAGGAC CGCATCCCGT TCACCTATGG CGTGATGCTG
ATCGGCACCC TGGCGCTGAC CGGCTTCCCG CTGACCGCCG GCTACTTCTC CAAGGACGCG
ATCATCGAGG CGGCGTTCGT CTCGAAGAAC CCGCTGGCGT TCTACGGCTT CCTGATGACC
GTGGTCGCCG CGCTGCTGAC CTCGTTCTAT TCGTGGCGCC TGGTGTTCAA GACTTTCCAC
GGTGAGCCGC ACGATCGGAA GCACTACGAG GCGGCGCATG AAAGCCCGCT GGTGATGACG
ATCCCGCTGT TCGTCCTCGC CTTCGGCGCG CTCGCGGCCG GCTATCCGTT CAAGGAGCTG
TTCGCCGGCC ACGGCATCGA GGAGTTCTTC CGCTCGTCGC TGAAGATGCA CCCGCACATC
ATCGAAGAGA TGCACCACAT CCCGGCGTGG ATCGCGTTGC TGCCGACGGT AATGATGGTG
GTGGGTTTCC TGGTGTCCTG GTTCTTCTAC ATCCGGCGTC CGGATATCCC GGTGGAGCTC
GCCAGCCAGC ATCGGCTGCT CTACCAGTTC CTGCTCAACA AGTGGTACTT CGACGAATTG
TACGAGATCA TCTTCGTGCG CCCGGCGAAG TGGATTGGGC GGCAACTCTG GAAGAAGGGC
GATGGCCTGC TGATCGACGG CTTCGGTCCC GACGGCATCT CCGCCAGGGT GCTCGATGTC
ACCCGCGGGG TGGTCCGGAT GCAGACCGGC TACCTCTACC ACTACGCATT CGCGATGCTG
ATCGGCGTGG CCGGTCTGAT CACCTGGTTC ATCCTCGGCT TGGGGGGCCG GTAA
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| Protein sequence | MIQAIVFLPL VGALIAAVIA LVGAHARNPS GDTVEHHDDH GHGHDHAGHG HDAHAHAAHG
HDDHAHDDHA HGPVEPAAAG SRLAEIVTTT LLLISCALSW VTLVEVGFMH HDSRVALLPW
INSGELQVAW ALRVDTLTAV MLVVVTTVSS LVHLYSIGYM HEDPHRPRFF GYLSLFTFAM
LMLVTADNLL QLFFGWEGVG LASYLLIGFW YQKPSANAAA IKAFVVNRVG DFGFLLGIFT
IFVLVGSTDF DTIFSAAPSL TGKTINFFGW HADALTLACL MLFMGAMGKS AQFLLHTWLP
DAMEGPTPVS ALIHAATMVT AGVFMVARMS PLFELAPNAQ AVVMFFGATT AFFAATIGLV
QNDIKRIVAY STCSQLGYMF VAMGAGAYSV GMFHLFTHAF FKALLFLGAG SVIHAMHHEQ
DIRNMGGLKD RIPFTYGVML IGTLALTGFP LTAGYFSKDA IIEAAFVSKN PLAFYGFLMT
VVAALLTSFY SWRLVFKTFH GEPHDRKHYE AAHESPLVMT IPLFVLAFGA LAAGYPFKEL
FAGHGIEEFF RSSLKMHPHI IEEMHHIPAW IALLPTVMMV VGFLVSWFFY IRRPDIPVEL
ASQHRLLYQF LLNKWYFDEL YEIIFVRPAK WIGRQLWKKG DGLLIDGFGP DGISARVLDV
TRGVVRMQTG YLYHYAFAML IGVAGLITWF ILGLGGR
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