| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3172 |
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| Symbol | secD |
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| ID | 6410842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3416908 |
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| End bp | 3418509 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713050 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001992151 |
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| Protein GI | 192291546 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.881845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTATA TCTCACGGTG GAAGGCGCTG GCGATCATCC TGACGGCGCT GGCAGTGTGC
CTTTGCGCCG TTCCCAATTT CTTCCCCGAG AGCACCGTCA AGAGCTGGCC GAAATGGGCG
CAGCGACACT TGGTGCTCGG CCTCGACCTG CAGGGTGGCT CGCACATCCT GCTCGAGGTC
GACGCCAATT CGGTGAAGAA GGACAAGCTC GATTCGGTTC GCGACGACGC CCGCCGGGTG
CTGCGCGAAG CCCGCATCGC CTACACCGGT CTCGCGACCA AGGGCGACTC GGTCGAAGTC
CGGATCAGCA AAGACACCGA CGTTCCGGCC GCACTCGCCA AACTCCGTGA GCTGTCGCAG
CCGCTCGGCG GTCTGCTCGG CTCCAACGGC CAGCGCAGCC TTGAAGTCTC CGACGCCGGC
GGCGGTCTGA TCCGCCTGAC GGTGCCGCAG GCCGCGATCG CCGATCGCGT CCGTCAGTCG
GTCGACCAGT CGATTCAGAT CGTCGAACGC CGCGTCAACG AACTCGGCAC CGTCGAGCCG
TTGATCCAGC GTCAGGGCGC CGACCGCATT CTGGTGCAGG TGCCGGGTCT GCAGGATCCG
ACCCGGCTGA AGGAGTTGCT CGGCAAGACC GCCAAGCTCG ACTTCCGGAT GGTCGACAGC
TCGGTGTCGG GCGATCAGGC GATGGGCGGG AACGTCCCGC CGGATTCCGA ACTGCTGATG
AGCGCATCGT CGCCGAAGCA GCCTTACGTG ATAAAGAAGC AGGTGCTGGT GTCCGGCGCC
GATCTCACCG ACGCGCAGCC CGGCTTCGAC CAGCGCACCG GCGAGCCCAT CGTCTCGTTC
CGCTTCAACA CCAACGGCGC CCGCAAATTC GCCCGCGCCA CCACCGAGAA CGTCGGCCTT
CCGTTCGCCA TCGTGCTCGA CAACGAGGTG ATTTCCGCGC CGGTGATCCG CGAGCCGATC
ACCGGCGGCT CCGGCCAGAT CTCGGGCAGC TTCACGGTGC AGGGCGCCAA TGACCTTGCG
ATCCTGCTGC GCGCCGGCGC GCTGCCGGCA CCGCTGACGA TCATCGAGGA GCGCACCGTC
GGTCCGGGCC TTGGACAAGA CTCGATCGAG AAGGGCGAAC GCGCCGCCTA TGTCGGCTCG
ATCCTCGTCA TCGTGTTCAT GCTGCTGACC TACCGGCTGT TTGGCGTGTT CGCCAACCTC
GCGGTCGCGG TCAACGTCGC GATGATCTTC GGCGTCCTGT CGCTGCTCAA TGCAACCCTG
ACGCTGCCCG GCATCGCCGG CATCGTGCTC ACGGTCGGCA TCGCGGTCGA CAGTAACGTT
CTGATCTACG AGCGCATCCG CGAGGAGATT CGTGCAGGCA GAAACGCGAT CTCGGCGATC
GACGCCGGCT TCAAACGCGC GCTGGCGACG ATTCTCGACT CCAACATCAC CACCTTCATC
GCCGCCGCCG TGCTGTTCTA TATCGGCACC GGTCCGGTGC GCGGTTTCGC GGTGACGCTG
GGCATCGGCA TCATCACCAC GGTGTTCACC GCCTTCACTT TGACCCGACT GATCGTCGCG
ACCTGGGTGC GCTGGAAGCG GCCGCACCAC GTGCCGATCT GA
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| Protein sequence | MLYISRWKAL AIILTALAVC LCAVPNFFPE STVKSWPKWA QRHLVLGLDL QGGSHILLEV
DANSVKKDKL DSVRDDARRV LREARIAYTG LATKGDSVEV RISKDTDVPA ALAKLRELSQ
PLGGLLGSNG QRSLEVSDAG GGLIRLTVPQ AAIADRVRQS VDQSIQIVER RVNELGTVEP
LIQRQGADRI LVQVPGLQDP TRLKELLGKT AKLDFRMVDS SVSGDQAMGG NVPPDSELLM
SASSPKQPYV IKKQVLVSGA DLTDAQPGFD QRTGEPIVSF RFNTNGARKF ARATTENVGL
PFAIVLDNEV ISAPVIREPI TGGSGQISGS FTVQGANDLA ILLRAGALPA PLTIIEERTV
GPGLGQDSIE KGERAAYVGS ILVIVFMLLT YRLFGVFANL AVAVNVAMIF GVLSLLNATL
TLPGIAGIVL TVGIAVDSNV LIYERIREEI RAGRNAISAI DAGFKRALAT ILDSNITTFI
AAAVLFYIGT GPVRGFAVTL GIGIITTVFT AFTLTRLIVA TWVRWKRPHH VPI
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