| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3169 |
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| Symbol | |
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| ID | 6410839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3414351 |
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| End bp | 3415223 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642713047 |
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| Product | putative phytoene synthase |
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| Protein accession | YP_001992148 |
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| Protein GI | 192291543 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.404092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGT CCGCCGCTAG CACCAGCGCT GCCGCGTTCT GCGCCGGCTT GGTGCGCGAG
GCCGACTTCG ACCGTTACGC GGCGACGCTG TTCGTCCCGC CCGAGAAACG CCGCTCGCTG
TTCGCGCTCG CTGCCTTCAA CGCAGAGATC GTGCGCGTGC GCAGCCAGGT CAGCCAGCCA
CTGCCCGGGG AGGTCCGGCT GCAGTGGTGG ACCGATCTGC TCGCCGGCAC CGCGCATGGC
GGCGCCGAAG GCAATCCGGT CGCGGCCGAA CTGACGCGCG CGATCGCCGA GCATGCGCTG
CCCGTCGAAC CGCTGACGCG GCTGATCGAG GCGCACATTT TCGACCTCTA CAACGACCCG
ATGCCGGACT GGACGGTGCT CGAGCCGCAT CTCGCCGAAA CCGAGGGCGC GCTGATCTCG
CTGACCGCGT GGGTGCTCGC GCAGGGCGCC GGGCAGGCTT CGGACGCGGT CGAGCACGTG
GCGCGGCACG CCGGCGTCGT GGTCGGAGTC GCGCGCATCG TGGCGCGGCT GCCTTATGAC
TCCGCGCGTC GCCAGCTGTA TCTGCCGAAC GACGTGCTGC AGCGGCACGG CTGTGATTTG
GAGCAGGTGT TTAGCGGCCA GTCGACCGCA GCGCTGCGTG CTGCTCTCAC TGAGGTGGTC
GCCGAGGCGC GCAAGCATCT CGATCAGGCG TTTCAGGAGC TGATCGAGCT GCCGGCAGCG
GTCCGCCCAG CCTTCTTGCC GCTCGCGCTC GCTTGCCGCG ATCTCGACAG CCTCGCGGCG
CCGGAGCGCG ACCCGTTCAC TCCCTTCGAG CGTTCGCGCC TGGCTACGCT GTGGACGCTG
TGGCGGGCGA GCCGAAGCAA ACCCTTTCGC TAG
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| Protein sequence | MSESAASTSA AAFCAGLVRE ADFDRYAATL FVPPEKRRSL FALAAFNAEI VRVRSQVSQP
LPGEVRLQWW TDLLAGTAHG GAEGNPVAAE LTRAIAEHAL PVEPLTRLIE AHIFDLYNDP
MPDWTVLEPH LAETEGALIS LTAWVLAQGA GQASDAVEHV ARHAGVVVGV ARIVARLPYD
SARRQLYLPN DVLQRHGCDL EQVFSGQSTA ALRAALTEVV AEARKHLDQA FQELIELPAA
VRPAFLPLAL ACRDLDSLAA PERDPFTPFE RSRLATLWTL WRASRSKPFR
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