Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3142 |
Symbol | |
ID | 6410812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3388219 |
End bp | 3390282 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642713020 |
Product | UvrD/REP helicase |
Protein accession | YP_001992121 |
Protein GI | 192291516 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.345803 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCCTTGC CCGCTCCGAT CCTCGATGGC CTCAATCCCG AGCAGCGCTG CGCCGTCGAG CACGGCGCGG GGCCGGCGCC CTGCCCGCCA CTGCTCGTGA TCGCCGGCGC CGGCAGCGGC AAGACCAACA CGCTGGCACA CCGGGTGGCT CATTTGGTTG TCGGCGGAGC CGACCCGTAT CGCATCCTAC TGATGACGTT CTCGCGCCGC GCTGCCGCCG AGATGACCCG CCGGGTCGAG CGGATCGCCC GCAAGGTGCT CGGCGACCGC GCATCGGCGC TGAGCGGCGG CCTGCACTGG GCCGGCACCT TCCACGGCAT CGGCGCCCGG CTGCTGCGCG ACTATGCCGA GCGGATCGGG CTCGATCCAG GCTTCACCAT CCACGATCGA GAAGACTCTG CCGATCTGAT GAACCTGGTC CGCCACGATC TCGGCTTCTC CAGGACCGAC AGCCGGTTTC CGGCCAAGGC GACGTGCCTG TCGATCTACT CGCGCTGCGT CAACGCCGGC CAGCCGCTCG ATGTCGTGCT CGGCGCCAAC TACCCGTGGT GCGCCGGCTG GGCCGCCGAG CTGAAGCAAC TATTCGCCGC CTATGTCGAA GCCAAGCAAC GCCACAACGT GCTCGATTAC GACGACCTGC TGCTGTACTG GGCGCAGGTG ATGGAGGAGC CGGCTTTCGC CGAAGAGATC AGCGGCCGGT TCGATCACGT GCTGGTGGAC GAGTATCAGG ACACGAACGC GCTGCAGGCG CGGGTGCTAC TGGCACTCAA GCCCAACGGC GCCGGATTGA CCGTGGTCGG CGACGACGCC CAGGCGATCT ACTCGTTTCG CGCCGCCACG GTGCGCAACA TCCTCGACTT CCCGAAGGCC TTCGATCCGC CCGCTCGCGT CGTCACGCTG GACCGCAACT ATCGCTCGAC CCAGGCGATC CTGTCGGCCG CCAATGGCGT GATCGATCTG GCACGCGAGC GTTTCACCAA GAACCTATGG ACCGATCGGG CCGAAGGTTC GCGGCCGCTG CTGGTCGGCG TCCGCGACGA AGCCGATCAG GCGCGCTACA TCGTCGAGCG GGTGCTCGAT GCCCGCGAGG GCGGCGCGAC GCTGAAGCAG CAGGCGGTGC TGTTCCGCAC CTCGTCGCAT TCCGCTCCGC TGGAGCTCGA GCTGACCCGG CGCAACATCC CGTTCGTCAA ATTCGGCGGG CTGAAGTTTC TCGACGCCGC GCACGTCAAG GACATGCTGG CGCTACTGCG CTTCGTGCAG AACCCGCGCG ACCGCGTCGC CGGATTCCGG GTGATGCTGC TGATGCAGGG CGTCGGCCCG GCGTCGGCGC AGAAGGCGCT GGATGCAATG ACGGCCACGG CCGACCCGCT GGGCACGCTG ACCGCCCTGC CCGCGCCGCC GCGCGCCGCC ACCGACTGGC GCGGCTTCGT CGCTGCGGTG CAGGAGTTGC GTAGCGGCGA TGCCGGCTGG CCGGCCGAGA TCGAACGTGC GCTGATCTGG TACGCGCCGC ATCTCGATCG CATCCACGAG GATGCCGAAA CCCGCAGGGC CGATCTGGTG CAGCTCGCGC AGATCGCCTC GGGATATCCG TCGCGCGAGC GCTTCCTCAC CGAATTGACG CTCGATCCGC CGGACGCGAC CTCCGATCAG GCCGGCGTGC CGACGCTCGA CGACGACTAT CTGATCCTGT CGACGATCCA TTCCGCCAAA GGCCAGGAAT GGAAGCAAGT GTTCGTGCTC AACGTCGTCG ATGGCTGCAT GCCGTCCGAC CTCGGCACCG GTACCTCGGC CGAGATCGAG GAAGAGCGTC GCCTGCTCTA TGTGGCGATG ACGCGGGCGA AAGACAATCT GCACCTCGTG GTGCCACAGC GGTTCTTCAC CCACGGCCAG AACGCCCAAG GCGACCGCCA CGTCTATGCG GCCCGCACCC GCTTCATTCC CGAGCGGCTG CTGCCCCTAT TCGAACGCAC CAGCTGGCCC CGCGTCACGC CCGAAGCCGC CGCGGCGGCG CAGCGCGGCC CGCGTATCGA CATCAACTCG CGGATGCGGC GGATGTGGAC CTGA
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Protein sequence | MSLPAPILDG LNPEQRCAVE HGAGPAPCPP LLVIAGAGSG KTNTLAHRVA HLVVGGADPY RILLMTFSRR AAAEMTRRVE RIARKVLGDR ASALSGGLHW AGTFHGIGAR LLRDYAERIG LDPGFTIHDR EDSADLMNLV RHDLGFSRTD SRFPAKATCL SIYSRCVNAG QPLDVVLGAN YPWCAGWAAE LKQLFAAYVE AKQRHNVLDY DDLLLYWAQV MEEPAFAEEI SGRFDHVLVD EYQDTNALQA RVLLALKPNG AGLTVVGDDA QAIYSFRAAT VRNILDFPKA FDPPARVVTL DRNYRSTQAI LSAANGVIDL ARERFTKNLW TDRAEGSRPL LVGVRDEADQ ARYIVERVLD AREGGATLKQ QAVLFRTSSH SAPLELELTR RNIPFVKFGG LKFLDAAHVK DMLALLRFVQ NPRDRVAGFR VMLLMQGVGP ASAQKALDAM TATADPLGTL TALPAPPRAA TDWRGFVAAV QELRSGDAGW PAEIERALIW YAPHLDRIHE DAETRRADLV QLAQIASGYP SRERFLTELT LDPPDATSDQ AGVPTLDDDY LILSTIHSAK GQEWKQVFVL NVVDGCMPSD LGTGTSAEIE EERRLLYVAM TRAKDNLHLV VPQRFFTHGQ NAQGDRHVYA ARTRFIPERL LPLFERTSWP RVTPEAAAAA QRGPRIDINS RMRRMWT
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