| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3121 |
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| Symbol | |
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| ID | 6410792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3366555 |
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| End bp | 3367574 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642713001 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001992102 |
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| Protein GI | 192291497 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTT CACGCAGGAG CTTGTTGAAG GCGTCGGCGG CGGCCGCCGC GATCGGCGGC
ATCGGTGCGC CTTGGGTGGC GCGCGCCGCT GAGGCCGAAT TCAAGTACAA ATACGCCAAC
AACCTGCCCG ACACCCATCC GCTCAACGTT CGCGCCCGCG AGATGTCGGC GGCGATCAAG
GCCGAGACCG ACGGCAAGGT CCAGATCGAC GTTTTCCCGA ACAACCAGCT CGGCTCCGAC
ACCGACATGC TGAGCCAGAT TCGCGCCGGC GGCGTCGAGT TCTTCACGCT GTCGGGCCTG
ATCCTGTCGA CCCTGGTGCC GGCAGCTTCG ATCAACGGCA TCGGCTTCGC ATTCCCGGAC
TATGAGACGG TCTGGAAGGC CATGGATGGC GAGCTCGGCG GCTATGTCCG CGGCGAGATC
CAGAAGGCCG GCCTGATGGT GATGGACAAG ATCTGGGACA ACGGCTTCCG CCAGACCACG
TCGTCGACCA AGCCGATCAA CGGCCCGGAC GACTTCAAGG GCTTCAAGAT TCGCGTGCCG
GTGTCGCCGC TGTGGACCTC GATGTTCAAG GCGTTCGATG CGGCCCCCGC CTCGATCAAT
TTCAGCGAAG TCTATTCGGC GCTGCAGACC AAGGTGGTCG AAGGCCAAGA GAACCCGCTG
GTGCTGATCT CGGCCGCCAA GCTGTACGAA GTCCAGAAGT ACTGCTCGCT GACCAACCAC
ATGTGGGACG GCTTCTGGTT CCTGGCCAAC CGCCGCGCCT GGGAAAAGCT GCCGCCGGAC
GTGCGCACGA TTGTCGCCAA GCACATCAAC GCGGCTGCGG TAAAGGAACG CGAAGACACC
GCCAAGCTCA ACGCCACCGT CAAGGAAGAG CTGACCGCCA AGGGGCTGAT CTTCAATCAG
CCGCCGGTGA TGCCGTTCCG CGACAAGCTG CGCAGCGCCG GCTTCTATGC CGAGTGGAAA
GGCAAATACG GCGATCAGGC GTGGTCGCTG CTCGAGAAGT CAGTCGGCAA GCTGGCGTAA
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| Protein sequence | MSFSRRSLLK ASAAAAAIGG IGAPWVARAA EAEFKYKYAN NLPDTHPLNV RAREMSAAIK
AETDGKVQID VFPNNQLGSD TDMLSQIRAG GVEFFTLSGL ILSTLVPAAS INGIGFAFPD
YETVWKAMDG ELGGYVRGEI QKAGLMVMDK IWDNGFRQTT SSTKPINGPD DFKGFKIRVP
VSPLWTSMFK AFDAAPASIN FSEVYSALQT KVVEGQENPL VLISAAKLYE VQKYCSLTNH
MWDGFWFLAN RRAWEKLPPD VRTIVAKHIN AAAVKEREDT AKLNATVKEE LTAKGLIFNQ
PPVMPFRDKL RSAGFYAEWK GKYGDQAWSL LEKSVGKLA
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