| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3090 |
|---|
| Symbol | |
|---|
| ID | 6410761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3333423 |
|---|
| End bp | 3334565 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642712970 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001992071 |
|---|
| Protein GI | 192291466 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.251732 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAG CCACGCAGGA TCAGCCGCTG CGGATCGTTC ATGCGGTGCG CGCTCCGGTC
GGCGGCATCA TCCGCCACAT CCTCGATCTC GCCAACGGTC AGGCCGACCG GGGCCATCAC
GTCGCGCTGA TCACCGACAG CCTCACCGGC GGCGACCGCG CCGTAGCGGC GCTCGACGAG
ATCGCCCCGA AGATGAAGCT CGGCGTCTAT CGCCTGCCGA TCCGGCGCGA GCCAAGCATC
ACGGATCTGT TCGTCTGGGG CCGCTTCGTC CGCCTGATCG CGACGCTGAG GCCGGACGTG
CTGCACGGCC ACGGCGCCAA GGCCGGCATC TTCATGCGCG TCGTGCCGCG GCCGACCGGA
TCGATCCGGG TCTACACGCC GCATGGCGGC TCGCTGCACT ACCCGACCAC GACGTTCAAA
GGGCAGCTCT ACAGCCGGCT CGAGCGGCTC TCGATGAACC GCACCGAACT ATTCCTGTTC
GAGAGCCAAT TTGCGCGCTC AACCTATGAG CGCATGATCG GCAAGCCCGA GGGCCTGGTC
CGCTGCGTGT TCAACGGCGT CACCGCCGGG GAATTCGATC CGGTTTCGCT GGCCGCTGAA
GCCAGCGACG TCTGCTATGT CGGCGAGTTC CGCCACATCA AGGGCGCCGA CCTGCTGATC
GACGCGATCG CACGGCTGCG GGCCGAGGGC CGTTCGGTGA CGCTGACGCT CGGCGGCGAC
GGCGAAGAGA CCGCCGCGTT GAAAGCGCAG GTCGCGCGGC TCGATCTCGG CGGCGCGGTG
CGCTTCATCG GCCACGTCAA AGCCCGTCAT GGTTTCGCGC AAGGCCGCCT GCTGGTGGTG
CCGTCGCGCG GCGATTCCAT GCCGTATGTG GTGATCGAAG CCGCCGCGGC CGGTGTGCCG
ATGGTCGCCG CCAATGTCGG CGGCATCCCG GAGATCTTCG GCCCGGACCA TCGCGACGCG
TTGTTCGCAC CCAGCGATCC GGCCGCGATG GCCAAGGCGA TCGCTGCCGC GCTCGACGAC
CTGAACGCCG CCCGCGACCG GGCCAAGCGG CTGCGCGAGC GGATCTTTCT GCACTTCTCG
CAAAAGGCGA TGGTCGAAGG CGTGCTTGCC GGCTACCGCG AGGCCTTAGC GAAGCAGCGC
TGA
|
|---|
| Protein sequence | MTPATQDQPL RIVHAVRAPV GGIIRHILDL ANGQADRGHH VALITDSLTG GDRAVAALDE
IAPKMKLGVY RLPIRREPSI TDLFVWGRFV RLIATLRPDV LHGHGAKAGI FMRVVPRPTG
SIRVYTPHGG SLHYPTTTFK GQLYSRLERL SMNRTELFLF ESQFARSTYE RMIGKPEGLV
RCVFNGVTAG EFDPVSLAAE ASDVCYVGEF RHIKGADLLI DAIARLRAEG RSVTLTLGGD
GEETAALKAQ VARLDLGGAV RFIGHVKARH GFAQGRLLVV PSRGDSMPYV VIEAAAAGVP
MVAANVGGIP EIFGPDHRDA LFAPSDPAAM AKAIAAALDD LNAARDRAKR LRERIFLHFS
QKAMVEGVLA GYREALAKQR
|
|---|
| |