| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2752 |
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| Symbol | |
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| ID | 6410416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2993018 |
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| End bp | 2994688 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642712628 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001991736 |
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| Protein GI | 192291131 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0761228 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCGGC CGCATTTTGC TCTCACGTCT GTTTTTCTGG CGAGTAGTGT CTCGCTCTCT
GCTTTTGGGT TCAGTTTTCC GGCCCGCGCG CAGAGCGAGG ACGCGGCGCA GAAATGTCAG
CAGCCGATCA AGTCGGTGGA GGCGAGCCTC GCCGCATGCA CGTCGGCGAT CGACACCGGC
GCACTGAGCG GCAAGGCACT GGCCGGTGCC TACATCAAGC GGGGCTTCCT ACGCACACGT
CAACGCGATC TTGTGGGCGC CGAGGCTGAT CTCGACGCGG CGATCAAGGC CAATCCGGAC
GCGGCGGACG CCTACACCAC GCGCGCCAAT TTCTGGAACG TCAGCGGCAA GCCCGACCGC
GCTCTGGCCG ATGCCGATCA GGCGATCAAG CTCGATCCGA ACCTGCCGCT GGCGCATTTC
GTGCGCGGCA GCGCTGAACT GAAGCTCGGG CACGACGATC GCGCCATCGC GGACTATTCC
CGCGCCATCG AGTTGCGGCC GAAAGAGAGT GGCGAGGTCT ATGCGGTGCG CGGCTTTGCG
TATCACCGCA AGGGCGACGA CATTCGCGCC TTGGCCGACT ACACCGAGGC ACTGAAAGCG
GCGCCAGAAG ACGTTGGCAC GCTGCTCAAT CGCGGCGATG CGCGGCGAAA CCTGCGCGAC
ACCGCCGGCG CAGCCGCCGA CTATAGCGAG GCGATCAAGC TTGCCCCTGG CAACGCCGGT
GGCTTCAAGG GGCGCGGCTT CATCCGACTG CTGACGCAGG ACACCGGAGG AGCGGTGGCC
GATTTCACCG AGGCGATCCG GCTGTCGCCG AGCGAGAGCG GGCTGTATCT CAACCGTGCC
TCGGCGCTCG GGCTGCAGAA CCAGAGCCTT CTCGCGCTGG CCGACGAGGA CATGGCAATC
CGGCTCGAGC CGCAGCATCC GCTCGCCTAC GTCAATCGCG CTGAGACGCT AAAGCTGCTC
GGCGACAAGG TTGCGGCGCG CGCGTCGGTG ACCAAGGCGC TGCAGCTCGC TCCTGGCTTT
CCGCCGACGG TCGAGGTGCT GAAGAAGCTC GGAGAGTCAA AGCGCAGCAA GGAGCCGTCA
CACGAGGCAG CGCAGGAAGC CTATCGGCGC TGCACCTTCC CGGTGAGCGA TCTCGGCCCG
GGCGAGGAGG GCATCAAGCA GATCATCAAG GTCTGCACAC TGCTGGTCAC TGCGCAGGGC
GGCAGCGACG CCAATCGCGC ACTGGTGCAT CTGCAGCGCG GCAGTATGTA TCGCCGGCAG
GGCGACTATC AGCACGCGCT GATCGATTTC AGCGAGTCGC TGCGCTACGA TCCGGAATCG
GCGCTGGCCT ATACAGGCCG CGGCAACGCC TATCGTGGGC TGAAGCTGCT CGATCAGGCG
CTCGCCGATC ACACCGAAGC GATTCGGCTC GATCCGAAAT ACGCTACCGC CTACAACAAT
CGGGGCAACG TCTGGCGCGA CAAGAACGAT CTGGCCAAGG CGATCGCCGA TTTTGACCGC
GCGATCGCGA TCAGCCCGAA CTACGCGATG GCGTATTTCA ACCGCGGCAA CTCGCGGCTG
GAGTCCGGCG ACAAAGACGG CGCGGTCGCC GACTTCCAGC AGACCGTCAA GCTCAGCCCG
CAGTTCAAGG AAGCGGCCGA GCGGCTGCAG GAACTCGGCG TGAGGATGTA G
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| Protein sequence | MARPHFALTS VFLASSVSLS AFGFSFPARA QSEDAAQKCQ QPIKSVEASL AACTSAIDTG
ALSGKALAGA YIKRGFLRTR QRDLVGAEAD LDAAIKANPD AADAYTTRAN FWNVSGKPDR
ALADADQAIK LDPNLPLAHF VRGSAELKLG HDDRAIADYS RAIELRPKES GEVYAVRGFA
YHRKGDDIRA LADYTEALKA APEDVGTLLN RGDARRNLRD TAGAAADYSE AIKLAPGNAG
GFKGRGFIRL LTQDTGGAVA DFTEAIRLSP SESGLYLNRA SALGLQNQSL LALADEDMAI
RLEPQHPLAY VNRAETLKLL GDKVAARASV TKALQLAPGF PPTVEVLKKL GESKRSKEPS
HEAAQEAYRR CTFPVSDLGP GEEGIKQIIK VCTLLVTAQG GSDANRALVH LQRGSMYRRQ
GDYQHALIDF SESLRYDPES ALAYTGRGNA YRGLKLLDQA LADHTEAIRL DPKYATAYNN
RGNVWRDKND LAKAIADFDR AIAISPNYAM AYFNRGNSRL ESGDKDGAVA DFQQTVKLSP
QFKEAAERLQ ELGVRM
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