| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2444 |
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| Symbol | |
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| ID | 6410106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2637435 |
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| End bp | 2639456 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642712323 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001991433 |
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| Protein GI | 192290828 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGAAC TTCCTTCCGC ACCGGATGCC CACACGTGGG GAATGATCAC CCTTGCCGCC
GTGCTGTGTG CGCTGGGCGT GGTCGCAGCC TATGGCGGGC TGCGCAGCAT CCGGGTCAGC
GAGGGCAAGG GTCGCCGGCA CTGGATCATC GCGACCTGCT TTGCATCGCT CAGCGCAGTT
GCGGCCGTTG TGGCGTTGGC GCTGCTGGCA GCCTCGGATG CGCCGCTCGC GCCGACCATC
GCACTGGTGC TGATGATCGG GTCGGTGATC GCCACCACCG GCTTTGCCAG CTTGGCGGTG
TGGCTGAGTT CGATCGCAGG CCGCCGCACC CAACTCACCT TGGCCGAACG CGACATGGTG
CTGGACGCGA TCCTCAACGA CGCGGCGCGC GGCTTCTGCC TGTTTGACGC CGTGGGGCGG
CTGCAGCTCT GGAACGAAGC CTTTCTCGAT ATCTATGGAA TCCCGCCCGG ACGTGAGATC
GCCGGCCACA GTCTGCGCCG CACGCTGGTG GTGATGCAGA ATTCCGGCAA CTTCGTCAGC
GACAAGCGGC AACTGATCGA ACTCGGTGCC GCGCTCGCCT CGGGCGGTCC GGCCAGCCTG
GTCGCCGAGC TGCGCGACGG CCGCCATATC CGGATCGATC TCCGGCGTCT GCCGAACGGC
GGCTGGATCG CCAAGCACAG TGATGTCACC GATCACAAAC AGGCCGAGCA GCGCTTCGCC
TATCTGGCGC TGCACGACGT CGCCACCGGT CTGCCGAACC GCGCTGCATT CAACGACCGC
ATCGTGCAGA GCGTCGAGCA GGCGCGCCGC TTCGACGGCA GCTTCGCGGT GATCCGGCTC
GGCATCGACC GCTTCAAGGA GATCAACGAC GTGTTCGGTC AGGCGGTCGG AGACGCGGTG
CTGGCCGAAA TGGCCCGCCG TCTCGCCGAC ACCTGCCATT GGGGCTTCCT GGCGCGGCCC
GGCGGCGACG AATTCTCGAT CGTCACGCCG CCCGATGCTG CGGCCGACTC GATCCAGGAC
GTCTGCCGGC AACTGACGGA ACTGTGCGAC ACCGAGTTCG AGGTCGACGG CCATCGCGTC
CGTGTCGGGG CGACCGCTGG CGTCAGCGTC TATCCGCGCG ACGGCGATGA CGCCGACACA
CTGATTGCCC ATGCGGACGT CGCACTGTAT CGCGCTAAGA CCGAGCAGCG CGGCACGGTG
TGTCTGTTCG AGCCGGCGAT GGATCTGCAG ATCCGCGAAA AGCGCGCCCT GCAGCGAGAA
CTCGCAGTCG CGCTGGAGCA GCGGCAGTTC GAAATCCACT ACCAGCCGCA GGCCAGTACA
TCCGGCGAGA TCGTCGGCTT CGAAGCGCTG CTGCGCTGGC GCCACCCGGT GCGCGGCATG
GTGTCTCCGG CGCTGTTCGT GCCGCTCGCG GAAGAGACCG GCCAGATCGG TCCGATCGAC
GAATGGGTGC TGCGCAGCGT CTGCGCCGAA GCGGCGTCCT GGGCCAAGCC GTTGGCGATC
GCGGTCAACT TCTCGCCGCT CGACTTCCGC CGCTTCGATG TGCCGGCGCT GATCCTACAG
ATTTTGCTTG AGACTGGACT CGAGGCGTCG CGCCTCGAGA TCGAAATCAC CGAAGGCGTG
CTGATCGATG ATTTCGCCGG CGCGATCGCG ATCCTGCGCA AGATCAAGAA TCTCGGCGTG
CGCGTCGCGA TGGATGATTT CGGCGCCGGC TACTCGTCGC TGTCGTATCT GCAGTCGTTT
CCGTTCGACA AGATCAAGAT CGATCAGGCC TTCACTCGCA AGCTCGAGAC CAATCCGGAA
TCGGCCGCGA TCGTCGAAGC GATCCTCAGC CTGGCGCGGA CGCTGAAACT GCCGGTGATC
GCCGAAGGTG TCGAGACCGA AAAGCAGCTC GCGTTTCTGG CTCAAGCCGG CTGCGACGAG
GTGCAGGGCT ATCTGATCGG CAGGCCGCAG CCGATAGCGC ATTACCGCGA TCTGACCACC
GGCGAAACGG TCGCAGCGGC ACCGTTGGCG CAAGCCGTTT GA
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| Protein sequence | MAELPSAPDA HTWGMITLAA VLCALGVVAA YGGLRSIRVS EGKGRRHWII ATCFASLSAV
AAVVALALLA ASDAPLAPTI ALVLMIGSVI ATTGFASLAV WLSSIAGRRT QLTLAERDMV
LDAILNDAAR GFCLFDAVGR LQLWNEAFLD IYGIPPGREI AGHSLRRTLV VMQNSGNFVS
DKRQLIELGA ALASGGPASL VAELRDGRHI RIDLRRLPNG GWIAKHSDVT DHKQAEQRFA
YLALHDVATG LPNRAAFNDR IVQSVEQARR FDGSFAVIRL GIDRFKEIND VFGQAVGDAV
LAEMARRLAD TCHWGFLARP GGDEFSIVTP PDAAADSIQD VCRQLTELCD TEFEVDGHRV
RVGATAGVSV YPRDGDDADT LIAHADVALY RAKTEQRGTV CLFEPAMDLQ IREKRALQRE
LAVALEQRQF EIHYQPQAST SGEIVGFEAL LRWRHPVRGM VSPALFVPLA EETGQIGPID
EWVLRSVCAE AASWAKPLAI AVNFSPLDFR RFDVPALILQ ILLETGLEAS RLEIEITEGV
LIDDFAGAIA ILRKIKNLGV RVAMDDFGAG YSSLSYLQSF PFDKIKIDQA FTRKLETNPE
SAAIVEAILS LARTLKLPVI AEGVETEKQL AFLAQAGCDE VQGYLIGRPQ PIAHYRDLTT
GETVAAAPLA QAV
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