Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2316 |
Symbol | |
ID | 6409977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 2503568 |
End bp | 2504509 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642712198 |
Product | DNA polymerase LigD, ligase domain protein |
Protein accession | YP_001991309 |
Protein GI | 192290704 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAGC GTGCGCGTGT TGTCCGAATA CATGCAGAGG GGGCCGTACC TGCCCCGATG CCTGGATTTG TCCAGCCCCA GCTTGCCACC CTGCGGACAC GTCCACCGTC CGGTGCCGGA TGGATCCACG AGATCAAGTT GGACGGATAC CGCGGCCAGG CGCACGTCGG CCCACAGGGG ACCCGCATTT ACACCCGCGG AGGTCATGAC TGGTCGAAGA TGTTCGCCCC GCTGGTCGCC GCCCTGTCGG ATGCCGCCGT CGACGAGGCG GTGATCGACG GCGAGATCGT GGTGGTCGTT GATGAGCGGA CGGATTTCGG AGCCCTGCAG GCCGACCTTG CGGCAAGACG TGCCGACCGC ATGCTGTTCT ACGCATTCGA CCTGCTGCAC CTCGACGGCT ACGACCTCGG GCCGGTCCCC CTGACCGAGC GCAAGCGGCT TCTCAAGGGC CTCTTCGACC GTGGCCTGGA GCCACCGGTC GTCTACAGCG ACAGCATGGA CGACGGCGAA GCAATGTTTG ATGGGGCTGG GCGCCTCGGG TGGGAAGGCA TCGTCAGCAA GCGCGCCGAC GCGCCCTATC GCAGCGGCGA CCGGAGCTTG GACTGGCAGA AGATCAAGAC CTCAAAGCGC GAGCATCTCG TCATCGTCGG CTACGTGCCG GCGACAGGCG GCATCGCCGC GCTGCACGTC GCCAGGCGCG ACGGCGACAG CTTGGTCTAC GCAGGAAAAG TCGGCACCGG GTTCTCGGTC AAGGTAGGCG CGGATCTGCG CCGGCGACTG GCGGAGATCG AGACAGCAGC ACCGCCAATC GCCAAGCCGC CACCACGGCA CCGGCCGCGG TGGGTCCGGC CGGTGATGAG CGCCGATGTC GAATACCGCG ACATCACCGC CAGCGGTCAT CTGCGCCACG CATCTTTCAA GGGGCTCGCG AAGGCTCCGT AA
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Protein sequence | MAKRARVVRI HAEGAVPAPM PGFVQPQLAT LRTRPPSGAG WIHEIKLDGY RGQAHVGPQG TRIYTRGGHD WSKMFAPLVA ALSDAAVDEA VIDGEIVVVV DERTDFGALQ ADLAARRADR MLFYAFDLLH LDGYDLGPVP LTERKRLLKG LFDRGLEPPV VYSDSMDDGE AMFDGAGRLG WEGIVSKRAD APYRSGDRSL DWQKIKTSKR EHLVIVGYVP ATGGIAALHV ARRDGDSLVY AGKVGTGFSV KVGADLRRRL AEIETAAPPI AKPPPRHRPR WVRPVMSADV EYRDITASGH LRHASFKGLA KAP
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