| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2162 |
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| Symbol | |
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| ID | 6409822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2340006 |
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| End bp | 2340881 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642712046 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001991158 |
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| Protein GI | 192290553 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.876023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAAGA CTCCGCTTCT GCTCGTCCGC CTCAGCGTCA CCACGCTCGG CGTCCTGGTC
GCCGCACTGA TCGGCTGGCG GCTGTGGGTC CACTACGAGA TCGAGCCGTG GACGCGCGAC
GGCCGTGTGC GCGCCGACAT CGTCGCGGTG GCGCCGGACG TCTCCGGCCT CGTCTCCGAG
GTGCTGGTCG TCGACAACCA GGTGGTGAAG AAGGGCGACA TCCTATTCCG GATCGATCGC
GAGCGCTTCA CCTTGGCGCT GCGCCAGGCC GACGCCGCGG TCGAAGGCCG CGTCGCCGCG
CTCGACGCCG CCAACAAGGA TCTGGCCCGC TATCGCAATC TCAGCAGCGA CGCCGTCACC
GAGCAGAAGC GCGAGCAGAT CACCGCCACC CAGGCCGAAG CTGAAGCTGC GCTGCATCAG
GCGATCGCCG ATCGGGATAT CGCCAAGCTC AATCTCGACC GATCGGAAGT CCGCGCCCAG
GTCGGCGGCC TGATCACCAA TTTCGATCTG CGCCCCGGTG CCTATGTCAA CGCCGGCAGC
GGCGTCGCCG CGCTGATCGA TCAGGCGACG CTGCATGTCG ATGGTTACTT CGAGGAGACC
AAGCTGCCCT CCATCCGTGT CGGCGATCGG GCCGAGGTGC GGCTGATGGG CGAGCGCAAC
CCGCTCTCCG GTCACGTCCA GAGCATCGCC GGTGGCATCG AGGACCGCGA CCGCAGCGCC
GGCGCCAAGC TGCTGCCGAA CGTCAACCCG ACCTTCAACT GGGTGCGGCT GGCACAGCGA
ATTCCGGTGC GGATCGCGCT CGACCACGTG CCGCCCGAGG TGCGCCTCGT GGTCGGCCGC
ACCGCCACCG TGGTGATCGA GCGCCGCGGC GGCTGA
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| Protein sequence | MGKTPLLLVR LSVTTLGVLV AALIGWRLWV HYEIEPWTRD GRVRADIVAV APDVSGLVSE
VLVVDNQVVK KGDILFRIDR ERFTLALRQA DAAVEGRVAA LDAANKDLAR YRNLSSDAVT
EQKREQITAT QAEAEAALHQ AIADRDIAKL NLDRSEVRAQ VGGLITNFDL RPGAYVNAGS
GVAALIDQAT LHVDGYFEET KLPSIRVGDR AEVRLMGERN PLSGHVQSIA GGIEDRDRSA
GAKLLPNVNP TFNWVRLAQR IPVRIALDHV PPEVRLVVGR TATVVIERRG G
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