| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2140 |
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| Symbol | |
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| ID | 6409800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2309908 |
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| End bp | 2311479 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642712024 |
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| Product | protease Do |
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| Protein accession | YP_001991136 |
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| Protein GI | 192290531 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.750781 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGATC GTCGCCCCGT CCTGTCCACG CAGTCTTCGC ACCGGCCCCA GTCGAGGTCG
TTGCTGTCGG CGCGCAAGTT CGCGCTGATG GCCTCGGTCG TCGCCGGTCT CGGCGCGGGG
GCTTTCGGGC TCGGCAACGG TTCGTTCGAT CTGATCGCCA CTCCGGCGCA TGCGCAGCAG
GTCGGCGCCA ACGTTCAGCC GGCGCAGCAG CCGGTCGGTT TCGCCGACAT CGTCGACAAG
GTGAAGCCGT CGGTGATCTC GGTGAAGGTC AACATCGCCG ACAAGATGGC CAAGAACGAA
GACCGCGAGG ACTTCTCGTT CCCGCCCGGC TCGCCGATGG AGCGATTCTT CCGCCGGTTC
GGCGGCGAGA TGCCTCCCGG CCTGCGCGGC CATCGCGGCG GCGGCATGAT CACCGGCCAG
GGCTCGGGCT TCTTCATCTC GGCCGACGGC TATGCGGTGA CCAACAATCA CGTGGTCGAA
GGCGCCGACA AGGTCGAAGT CACCACCGAC GACGGCAAGA CCTACAAGGC CAAGGTGATC
GGCAATGATC CGCGCACCGA CTTGGCGCTG ATCAAAGTCG AAGGCGGTTC GAACTTCCCC
TACGCCAAGC TGTCGGAAGG CAAGCCGCGG ATCGGTGACT GGGTGCTGGC GGTCGGCAAT
CCGTTCGGCC TCGGCGGCAC CGTGACGGCC GGCATCGTCT CGGCGATGGG CCGCGACATC
GGCAACGGTC CGTACGACGA CTTCATCCAG ATCGACGCGC CGGTGAACAA GGGCAACTCC
GGTGGTCCGG CGTTTAACAC CGCGGGCGAA GTGGTCGGCG TCAACACCGC GATCTATTCG
CCGTCGGGCG GCAGCATCGG CATCGCATTC TCGATCCCGG CCAACACCGT CAAGGCGGTG
GTCGAGCAGC TCAAGGATCG CGGCTCGGTG AGCCGTGGCT GGATCGGCGT GCAGGTGCAG
CCGGTGACGC CGGAGATCGC CGACAGCCTC GGCTTGAAGA AGGCGGAAGG CGCGCTGGTC
GCAGAGCCGC AGTCGAACGG TCCGGCCGCC AAGGCCGGCA TCGAATCCGG CGACGTGATC
GTCGCGGTCG ATGGCACGTC GGTGAAGGAC GCTCGCGAAC TCGCCCGCAC CATCGGTGCG
TTCGCGCCGG GTCATGCGGT CAAGCTCACC GTGTTCCACA AGGGCAAGGA GCGTGAGCTG
ACGCTGACGC TCGGCGAGCT GCCGAACAAG ATCGAAGCCA GCAACAACAC CGACCGCGGT
GATCGCGGCG GAGCCAACCA GGGCCTCGAC CTGCCCAAGC TCGGCCTGAC GCTGGCTCCC
GCCAGCTCGG TCGCCGGTGC CGGCAAGGAT GGCGTGGTGG TCACCGACGT CGATCCGAAG
GGCGCCGCTG CAGACCGCGG CTTCAAGGAA GGCGATGTGA TCCTCGAGGT CGCCGGCAAG
AACGTGTCGA GCCCGGCGGA CGTCCGCGAC GTGCTCGCTA CGGCGAAGAC CGAAAACAAG
AACAGCGTGC TGGTCCGGGT ACGCAGCGGC GGCGCCTCGC GCTTCGTCGC CCTCCCGATC
GCCAAGGGCT GA
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| Protein sequence | MHDRRPVLST QSSHRPQSRS LLSARKFALM ASVVAGLGAG AFGLGNGSFD LIATPAHAQQ
VGANVQPAQQ PVGFADIVDK VKPSVISVKV NIADKMAKNE DREDFSFPPG SPMERFFRRF
GGEMPPGLRG HRGGGMITGQ GSGFFISADG YAVTNNHVVE GADKVEVTTD DGKTYKAKVI
GNDPRTDLAL IKVEGGSNFP YAKLSEGKPR IGDWVLAVGN PFGLGGTVTA GIVSAMGRDI
GNGPYDDFIQ IDAPVNKGNS GGPAFNTAGE VVGVNTAIYS PSGGSIGIAF SIPANTVKAV
VEQLKDRGSV SRGWIGVQVQ PVTPEIADSL GLKKAEGALV AEPQSNGPAA KAGIESGDVI
VAVDGTSVKD ARELARTIGA FAPGHAVKLT VFHKGKEREL TLTLGELPNK IEASNNTDRG
DRGGANQGLD LPKLGLTLAP ASSVAGAGKD GVVVTDVDPK GAAADRGFKE GDVILEVAGK
NVSSPADVRD VLATAKTENK NSVLVRVRSG GASRFVALPI AKG
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