| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2039 |
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| Symbol | |
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| ID | 6409699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2209283 |
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| End bp | 2211442 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642711925 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_001991037 |
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| Protein GI | 192290432 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGA TTCCGAACTT CGCCGAGATC GCATTCCAGC CCACTGCCGC CCCTGCCCCT
GCAGGTGAGG CCCAGCCGTG GCTGACGCCC GAAGGCATTC TGGTCAAGCC GGGCTACTCC
GAGGCGGATG TCGCCGGCAT CGATTTTCTC GACACCTGGC CGGGCGTCGC GCCGTTCCTG
CGCGGCCCCT ACCCGACCAT GTACGTCAAC CAGCCGTGGA CGATCCGGCA ATATGCCGGC
TTCTCGACCG CTGAAGATTC CAACGCGTTC TATCGCCGCA ACCTCGCCGC CGGTCAGAAG
GGCCTGTCGG TGGCGTTCGA CCTCGCCACC CACCGCGGCT ACGACTCGGA TCATCCGCGC
GTCGCCGGCG ACGTCGGCAT GGCCGGCGTG GCGATCGACT CGATCTACGA CATGCGCACG
TTGTTCGCCG GCATCCCGCT CGACCAGATG AGCGTGTCGA TGACCATGAA CGGCGCGGTG
CTGCCGATCC TGGCGCTGTA CGTCGCCGCC GCCGAGGAAC AGGGCGTCTC CCCGGAAAAG
CTGTCGGGCA CCATTCAGAA CGACATTCTG AAAGAGTTCA TGGTGCGCAA CACCTACATC
TATCCGCCGG TGCCCTCGAT GCGGATCATC TCCGACATCT TCGCCTACAC CTCGCAGAAG
ATGCCGAAGT TCAACTCGAT TTCGATCTCC GGCTATCACA TGCAGGAAGC CGGCGCGACG
CAGGACCTCG AGCTCGCTTA TACGCTCGCC GACGGCGTCG AATACGTCCG CGCCGGCATC
GCGGCCGGTC TCGACGTCGA CAAGTTCGCG CCGCGGCTGT CGTTCTTCTG GGCGATCGGC
ATGAACTTCT TCATGGAAGT CGCCAAGATG CGCGCCGCGC GCCTGCTGTG GGCCAAGCTG
CTGACGCAGT TCGACCCGAA GCAGCAGAAG TCGCTGAGCC TGCGCACGCA CTGCCAGACC
TCCGGTTGGT CGCTGACCGC GCAGGACGTG TTCAACAACG TCTCCCGGAC AACTATCGAA
GCGATGGCCG CCACCCAGGG CCACACCCAG TCGCTGCACA CCAACGCGCT CGACGAAGCC
TTGGCGCTGC CGACGGACTT CTCGGCGCGG ATCGCACGCA ACACCCAGCT GTTCCTGCAG
CAGGAGAGCG GCACCACAAG GATCATCGAT CCGTGGGGCG GCTCGTACTA TGTCGAACGG
CTGACCCACG ACATCGCGGT GAAGGCCTGG GCTCACATCC AGGAAGTCGA AGCGCTCGGC
GGCATGGCCA AGGCGATCGA AGCCGGCGTG CCGAAGCTGC GCATCGAGGA AGCTGCCGCC
AAGACCCAGG CGCGGATCGA CACCGGCCGG CAGTCGGTGA TCGGCGTCAA CAAGTACAAG
CCGACCGATG AAACTCCGAT CGACGTGCTC AAGGTCGACA ATTCGACCGT GCGCCGGCTG
CAGATCGACA AGCTCGGCCG GCTGAAGAAG GAGCGCGTCC AGGCCGATGT TGACGCCGCG
TTATTGGCGC TGACCCGCTC GGCTTCGGAA GGCAACGGCA ACCTGTTGGC GCTGGCGATC
GATGCGGCGC GCAAGAAAGC CACCGTCGGC GAAATCTCCG ACGCGCTGGA GAAGGTCTAT
GGCCGGCATC GCGCCGAGAT CAAGTCGATC ACCGGCGTCT ACAAGCGGGA GGTCGCATCG
ATGGCGGACC GGATGGAGAA GGTGCAGGCG CTGATCGACG CGTTCGAAGA CGCCGAGGGC
CGTCGCCCGC GTATCCTCGT CGCCAAGATC GGCCAGGACG GCCACGACCG CGGCCAGAAG
GTGATCGCCT CGGCGTTCGC CGACATCGGC TTCGACGTCG ACATCGGGCC GCTGTTCGCC
ACCGCCGAGG AGGCGGCGCG GCAGGCGGTG GAGAACGACG TCCACATTCT CGGCGTGTCG
TCGCTGGCCG CCGCGCATCT CACCGCGGTC CCGGAACTCA AGGCCGCGCT GAAGAAGCAG
GGTCGCGAGG ACATCATGAT CATCATCGGC GGTGTGGTCC CGCCGCAGGA CTACGACGCG
CTCTACAAGT CAGGCGCCGA AGCGATCTTC CCGCCCGGCA CCGTGATCGC CGACGCCGCC
GAGGAGTTGA TCCACAAGCT GAACGCCCGC CTCGGCCATT CCAGCCAGGC GGCGGAGTAG
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| Protein sequence | MSKIPNFAEI AFQPTAAPAP AGEAQPWLTP EGILVKPGYS EADVAGIDFL DTWPGVAPFL
RGPYPTMYVN QPWTIRQYAG FSTAEDSNAF YRRNLAAGQK GLSVAFDLAT HRGYDSDHPR
VAGDVGMAGV AIDSIYDMRT LFAGIPLDQM SVSMTMNGAV LPILALYVAA AEEQGVSPEK
LSGTIQNDIL KEFMVRNTYI YPPVPSMRII SDIFAYTSQK MPKFNSISIS GYHMQEAGAT
QDLELAYTLA DGVEYVRAGI AAGLDVDKFA PRLSFFWAIG MNFFMEVAKM RAARLLWAKL
LTQFDPKQQK SLSLRTHCQT SGWSLTAQDV FNNVSRTTIE AMAATQGHTQ SLHTNALDEA
LALPTDFSAR IARNTQLFLQ QESGTTRIID PWGGSYYVER LTHDIAVKAW AHIQEVEALG
GMAKAIEAGV PKLRIEEAAA KTQARIDTGR QSVIGVNKYK PTDETPIDVL KVDNSTVRRL
QIDKLGRLKK ERVQADVDAA LLALTRSASE GNGNLLALAI DAARKKATVG EISDALEKVY
GRHRAEIKSI TGVYKREVAS MADRMEKVQA LIDAFEDAEG RRPRILVAKI GQDGHDRGQK
VIASAFADIG FDVDIGPLFA TAEEAARQAV ENDVHILGVS SLAAAHLTAV PELKAALKKQ
GREDIMIIIG GVVPPQDYDA LYKSGAEAIF PPGTVIADAA EELIHKLNAR LGHSSQAAE
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