Gene Rpal_2022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2022 
Symbol 
ID6409682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2194307 
End bp2194876 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content61% 
IMG OID642711908 
ProductRNA polymerase sigma factor 
Protein accessionYP_001991020 
Protein GI192290415 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.80309 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTACCA AGCAGGCAGC CACCGACGAC GTCCTGATCG CCAGGATCGC CCAGGGGGAC 
CGGGTCGCGA TGCAGGTCCT GTATGGACGG CATCACGTCA AAGTCTTCCG GTTCGGACTG
CGCCTCGTTC GGAACGAACA GATCGCCGAG GATCTTATCA GCGAAGTCTT CCTCGACGTC
TGGCGTCAGG CCGGCAAGTT CGAGGGACGG TCTTCGGTTT CAACCTGGCT GCTGGCGATT
ACGCGGTTCA AGGCGCTATC GGCGCTGCGA CGGCGTAAGG ACGCCGAACT GGACGACGAG
GCCGCCGCTG CGATCGAGGA TCCTTCCGAC GATCCGGAGA TCGCGGTGCA GAAGAAGGAC
ACAGGCGAAG CTCTGCGGAA GTGCCTGACC TCACTGACGC CCGAGCATCG AGAGATCGTC
GATCTGGTGT ACTACCATGA GAAATCCATC GAAGAAGTCG CCGAGATCGT CGGAATTCCG
GAGAACACGG TGAAAACCCG ACTGTTCTAC GCACGCAAGA AACTCGCCGA TCTGCTGCAG
GCGGCCGGCG TGCAGCGAGG CTGGCCATGA
 
Protein sequence
MSTKQAATDD VLIARIAQGD RVAMQVLYGR HHVKVFRFGL RLVRNEQIAE DLISEVFLDV 
WRQAGKFEGR SSVSTWLLAI TRFKALSALR RRKDAELDDE AAAAIEDPSD DPEIAVQKKD
TGEALRKCLT SLTPEHREIV DLVYYHEKSI EEVAEIVGIP ENTVKTRLFY ARKKLADLLQ
AAGVQRGWP