| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2013 |
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| Symbol | |
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| ID | 6409673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2184195 |
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| End bp | 2185613 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642711899 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_001991011 |
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| Protein GI | 192290406 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.226354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTGGT GGACGAGACT CGTTGGCAGC GCGTATCGCG CTCATCGCTC GGCGTTGACC
CTGGGGGTCG CGACGGCGAT CGGCGTCGCA GCGGCCGGCC CGGTATCGGC CGAAGGACTA
TCCGACGCGC TGGTCAAGGC TTACCAATCC AATCCGCAGC TCACCGCCGA ACGCGCCCGC
CAGCGCGCGA CTGATGAGAA CGTCCCGCAA GCACTCGCCG GCTATCGGCC GCAGCTTCTG
GCGACACTTG GTGCCGGCCT GCAGCAGGTC CGCAACCTGC TCCCCACCAA TACCTACCAG
GGCGACACGC TGCGCCCGTG GACGATCGGC GTCACCGTCA CGCAGACGCT GTTCAACGGC
TTCCGCACCG CCAACAGCGT GCGGGTCGCC GAGCTGCAGG TGAAGTCGGG CCGCGAGGCG
CTGCGCAACG TCGGCCAGGG CGTGCTGCTC GACGCGGTGA CCGCTTATAC CAACGTGCTC
GCCAACCAGG CCTTGGTGGC GGCGCAGAAG GCTAACGTCG ATTTCCTCAG CCAGACGCTC
GACATCACCA AGAAGCGCCT GAACGCCGGC GACGTCACCC CGACCGACAC CGCGCAGGCC
GAAGCGCGGC TCAACCGCGG ACGCGCCGAC CTCAACGCGG CGGAAGTGAA CCTCGCGATC
AGCCAGGCCA CCTACGCAGC GGTGATCGGC AGTCCGCCGG GCACGCTGAA CAATGCCACG
CCGGTCGACC GGCTGCTGCC GAAGAGCCGC GAAGACGCGA TCGCGCAGGC GGCGAAGGGC
AATCCCGCGG TGCTGGCCGC GGGCTACGAC GTCGACGTCG CTACCACCAC CATCAAGGTC
GCCGAAGGCG CGCTGCTGCC GACCGTCACG TTGCAGGGCA GCGCCAGCCG CGCCAGCCAG
ACCGACTCCA CGCTCGGCAC CTACGGCACC GACCAGGCAT CGGTGATCGG CCAGATCAAC
GCGCCGATCT ATGACGGCGG CACAGCGGCG TCGCAGACCC GGCAATCGAA AGAACTTGCG
GCGCAGAGCC GCTCGGTTCT CGATCTGGTG CGCAACCAGA CCCGCACTGC CACAATCGGC
GCCTGGGTTT CGAACGAAGG CGCCAAGATC GCGGTGAGCG CCGCGGAGTC CGAAGTCCGC
GCTGCCGAAA TCGCGCTGCA GGGCGTCAGC CGCGAAGCCC AGGGTGGCCA GCGCACCACC
GTCGACGTAC TGAACTCTCA GCAGGATCTG ATCCAGGCCA AAGCCCGCCT GATCGGCGCT
CAGCGCGACC GTGTGGTCGC GTCCTACACC CTGCTCAGCG CGATCGGCCG CCTCGACGTC
CAGAACCTCG GCCTTAACAC CCCGGACTAT CTGCCGGACG TGCACTATCA CCAGGTCCGC
GACGCCTGGC ACGGGCTGCG CACCCCGTCG GGGCAGTGA
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| Protein sequence | MVWWTRLVGS AYRAHRSALT LGVATAIGVA AAGPVSAEGL SDALVKAYQS NPQLTAERAR
QRATDENVPQ ALAGYRPQLL ATLGAGLQQV RNLLPTNTYQ GDTLRPWTIG VTVTQTLFNG
FRTANSVRVA ELQVKSGREA LRNVGQGVLL DAVTAYTNVL ANQALVAAQK ANVDFLSQTL
DITKKRLNAG DVTPTDTAQA EARLNRGRAD LNAAEVNLAI SQATYAAVIG SPPGTLNNAT
PVDRLLPKSR EDAIAQAAKG NPAVLAAGYD VDVATTTIKV AEGALLPTVT LQGSASRASQ
TDSTLGTYGT DQASVIGQIN APIYDGGTAA SQTRQSKELA AQSRSVLDLV RNQTRTATIG
AWVSNEGAKI AVSAAESEVR AAEIALQGVS REAQGGQRTT VDVLNSQQDL IQAKARLIGA
QRDRVVASYT LLSAIGRLDV QNLGLNTPDY LPDVHYHQVR DAWHGLRTPS GQ
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