| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1986 |
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| Symbol | |
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| ID | 6409646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2146838 |
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| End bp | 2148145 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642711872 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001990984 |
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| Protein GI | 192290379 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.95556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGACCA ATGAGACCGT GGCCGCCATC GGCTTCGTCA GCCTGTTCGT TCTGATGCTA
CTGCGCGTGC CGGTCGGCAT GGCGATGGGC CTCGTCGGCG TCAGTGGCTT CGGCTATCTC
ACCGGCTTCG AACCGGCGCT GAAGCTGGTC GGCCAGACCA CGATGCGCAC CGTCACCGAC
TATTCATTCG GCGTGATCCC GATGTTCCTG CTGATGGGCG CGTTCGTGTC GGCCTCGGGC
ATCAGCCGCG AGCTGTTCCG CGCCGGCAAT ACCATCGTCG GCCATTGGAA GGGCGGGCTC
GGCATCGCCA CCATCGCGGC CTGCGGCGGC TTCGCGGCGA TCTCCGGCTC GTCGGTCGCG
ACCGCGGCGA CGTTTTCGGC GGTGGCCTAT CCTGAGATGC GCCGGTTCGG CTATCCGCAG
TCGTTCTCGA CCGGCGTCAT CGCGGTCGGT GGCACGCTCG GCGCGATGCT GCCGCCGTCA
ACCGTGCTGG CGGTGTACGG CATCATCACC CAGCAGGACA TCGGCAAGCT ATTCATTGCC
GGCATCCTGC CGGGCCTGCT CGCGATCGTG ATGCACATGA TCACGATCTG GATCATCGGC
GTGGCGCGGC CGGGCTTCCT GCCGGCCGGG CCGAAGAGTT CGTGGGGCGA CCGCCTTGCC
GCCTTCCGTG ACGTGTGGTC GCCGCTGCTG CTGTTCCTGT TCGTGATCGG CGGGCTGTAT
GGCGGCTTCT TCATTCCGAC CGAAGCCGGC GCCGTCGGCG CCGTCGGCGC GTTCCTGATC
GGCATCCTGC GCGGCAAGCT CGACCGCGAC GGCATCCTGC AGTCGCTGCT GCAGGCCACC
CGCACGGCGG CCGCGGTGTT CACCGTGCTG ATCGGCGCGC TGTGCTTCGG CTACTTCCTG
ACCATCACCC AGACGCCGCA ATACGTCACC GAATTCCTCA CCGGGCTCGG CATCGGGCCC
TACGGCGTGC TGGCGCTGAT TCTGCTGATG TATCTGGTGC TCGGCTGCCT GATGGACGCG
ATGGCGATGG TGATCCTCAC CGTTCCGATC GTGTTTCCTG TCGTCACCGC GCTCGGCTTC
GATCCGATCT GGTTCGGCAT CATCATTGTG ATGACGGTTG AACTTGGCCT GATCCATCCG
CCGGTCGGCA TGAATGTGTT CGTGATCAAG AGCGTGATCA AGGACGTCAG CATGTCCACG
GTGTTCGCCG GCGTGCTGCC GTTCGTCGTC ACCGACCTGA TCCGGCTGGT GATCCTGATC
GCATTTCCGA TCATCGCGCT GTGGCTGCCG ATGCGGATGA TCGGGTAG
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| Protein sequence | MLTNETVAAI GFVSLFVLML LRVPVGMAMG LVGVSGFGYL TGFEPALKLV GQTTMRTVTD
YSFGVIPMFL LMGAFVSASG ISRELFRAGN TIVGHWKGGL GIATIAACGG FAAISGSSVA
TAATFSAVAY PEMRRFGYPQ SFSTGVIAVG GTLGAMLPPS TVLAVYGIIT QQDIGKLFIA
GILPGLLAIV MHMITIWIIG VARPGFLPAG PKSSWGDRLA AFRDVWSPLL LFLFVIGGLY
GGFFIPTEAG AVGAVGAFLI GILRGKLDRD GILQSLLQAT RTAAAVFTVL IGALCFGYFL
TITQTPQYVT EFLTGLGIGP YGVLALILLM YLVLGCLMDA MAMVILTVPI VFPVVTALGF
DPIWFGIIIV MTVELGLIHP PVGMNVFVIK SVIKDVSMST VFAGVLPFVV TDLIRLVILI
AFPIIALWLP MRMIG
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