| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1977 |
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| Symbol | |
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| ID | 6409637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2137714 |
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| End bp | 2138628 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711863 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990975 |
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| Protein GI | 192290370 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0854681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGG CACTGGACGG CAAAGTCATC ATCGTCACCG GCGCGGGGCG CGGCATCGGC
CGCGAGATCG CGCTGCTCGC GGCGCGCGAA GGCGCCAAGG TGGTCGTCAA CGATCCGGGC
GTCGCATCCG ACGGCTCCGG CACCGATGCC GCCCCGGCCG AGCAGGTCGT CGAGGAGATC
AAGAAGGAAG GCGGCACCGC GGTCGCGAAT TTCGAGAGCG TCGCCGAGGC GATTCCTGCC
AGCAAGATCG TCAAGCAGGC GGTCGACACC TACGGCAAGC TCGACGGCGT CGTGAACAAC
GCCGGCATCC TGCGCGACGC GATCTTCCAC CGCATGAGCA TCGACGCGTT CGAGCAGGTG
ATCAAGGTGC ACCTGATGGG CACGTTCTAC GTGTCGCACG CCGCCGCCCG GCTGTTCCGC
GAGCAGGAGA GCGGCTCGTT CGTGCACTTC ACCTCGACCT CGGGCCTGAT CGGCAATTTC
GGCCAGGCCA ACTATGCGGC CGCCAAGCTC GGCATTGTCG GCCTGTCGAA GTCGATCGCG
CTCGACATGC AGCGCTTCAA CGTCCGCTCC AACTGCGTGT CGCCGTTCGC CTGGAGCCGC
CTGATCGGCA CCATCCCGAC CGAGACCGAA GCCGAGAAAG CCCGCGTTGC GCGGATGCAG
CAGATGGGCC CGGAGAAGAT CGCGCCGCTG TCGGTGTATC TGCTCGGCGA CGCCGCCAAG
GACGTCAGCG GCCAGATCTT CGCGGTGCGG ATGAACGAGA TCTTCCTGAT GGGCCAGTCG
CGCCCGATCC GCTCGGTGCA TCGCGACGGC GGCTGGACCT GCGAGAGCCT CGCCGAGCAC
GGCATGCCGG CGCTGAAGGG CTCGTTCTAC AAGCTCGACC GCTCCGCCGA CATCTTTAAC
TGGGATCCGG TGTAA
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| Protein sequence | MAKALDGKVI IVTGAGRGIG REIALLAARE GAKVVVNDPG VASDGSGTDA APAEQVVEEI
KKEGGTAVAN FESVAEAIPA SKIVKQAVDT YGKLDGVVNN AGILRDAIFH RMSIDAFEQV
IKVHLMGTFY VSHAAARLFR EQESGSFVHF TSTSGLIGNF GQANYAAAKL GIVGLSKSIA
LDMQRFNVRS NCVSPFAWSR LIGTIPTETE AEKARVARMQ QMGPEKIAPL SVYLLGDAAK
DVSGQIFAVR MNEIFLMGQS RPIRSVHRDG GWTCESLAEH GMPALKGSFY KLDRSADIFN
WDPV
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