| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1924 |
|---|
| Symbol | |
|---|
| ID | 6409584 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 2072969 |
|---|
| End bp | 2073442 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642711810 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_001990922 |
|---|
| Protein GI | 192290317 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.082152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGG CGACTCCGCA GACCCTGGCC GAACTATCGC CCGACCAACT GGCGCGGGCC
TGCGCCGATG CAATGTGGAC CAACGATCAC GCCAGCAAAG CGCTGGGTAT GGAGATCGTC
GAGATCGGCG CCGGCTCGGC CACGCTGGCG ATGACGGTGA CCACCGACAT GGTCAACGGC
CACGGCATCG CCCATGGCGG CTTCATCTTC ACCCTCGCCG ACTCGGCCTT CGCCTACGCC
TGCAATTCCT ACAACGACTC GACGGTCGCG GCGCAGGGCG CGATCACCTT CATCCGTCCC
GGCAAACTCG GTGCCCGGCT GGTCGCCGCT GCGCGCGAAG TGTCGCTCTC CGGCCGCAGC
GGCATCTACG ACGTCCGCGT CACCTCGGGC CAGACGGTGA TCGCCGAATT CCGCGGCCAT
TCGCGCTCGA TCGGCGGCAC GCTGGTGCCA CCGCAACAAC CAGACCCACG CTGA
|
|---|
| Protein sequence | MTAATPQTLA ELSPDQLARA CADAMWTNDH ASKALGMEIV EIGAGSATLA MTVTTDMVNG
HGIAHGGFIF TLADSAFAYA CNSYNDSTVA AQGAITFIRP GKLGARLVAA AREVSLSGRS
GIYDVRVTSG QTVIAEFRGH SRSIGGTLVP PQQPDPR
|
|---|
| |