| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1880 |
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| Symbol | |
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| ID | 6409539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2023250 |
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| End bp | 2024011 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711768 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990881 |
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| Protein GI | 192290276 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCCAC TGTTCGACGT CAGCAACGAA GTCATTCTGG TCACGGGCGC ATCGCAGGGT
CTGGGGCGGC AATTCGCCCG CGTGCTCGCC GCCCGCGGCG CCGCGATCGT GCTGGCCGCG
CGACAGATCG ACAAGCTGCA GAGCCTGGAG CAGGAGATCA AGGACAGCGG CGGCCGCGCC
GTGGCGGTGC GGATGGATGT CACCGATCTC GGCTCGATGG CCGCCGCGCT CGATCAGGCC
GAAGCTGCGC TCGGTCCGAT CACCGTGCTG ATCAACAATG CCGGCGTCGC CACCGAGAAG
CTCGCGATCG ACACTAGCGA GGCGGATTGG GACAAGGTGA TCGGCGCCAA TCTGAAGGGC
GCTTACTTCC TCGCCACCGA AGTCGCGCGC CGGATGATCG CGCGGCAGCA GGGCGGCAAC
ATCGTCAACA TTGCCTCGGT GCTCGGCCAG AGCGTGCTGA AATTCGTCTC GCCCTACGCG
ATCTCAAAGG CCGGCATCAT TCAGGCCACC AAGGCGATGG CGCTCGAACT CGCCAGCTCG
CGCATTCGCG TCAACGCGCT GGCGCCGGGC TACATCGACA CCGACATCAA TCGCGACCTG
TGGTCGACGC CGGCCGGCGA GAAGCTGGTC AAGAGCATCC CGCAGCGCCG CGTCGGCCAC
GAGTCCGATC TCGACGGCGC CATCCTCCTG CTCGCCTCGA ACGCATCGCG CTACATGACC
GGCAGCGTGG TGACGGTGGA TGGCGGGTTT TTGCTGGGGT AG
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| Protein sequence | MDPLFDVSNE VILVTGASQG LGRQFARVLA ARGAAIVLAA RQIDKLQSLE QEIKDSGGRA
VAVRMDVTDL GSMAAALDQA EAALGPITVL INNAGVATEK LAIDTSEADW DKVIGANLKG
AYFLATEVAR RMIARQQGGN IVNIASVLGQ SVLKFVSPYA ISKAGIIQAT KAMALELASS
RIRVNALAPG YIDTDINRDL WSTPAGEKLV KSIPQRRVGH ESDLDGAILL LASNASRYMT
GSVVTVDGGF LLG
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