| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1854 |
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| Symbol | |
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| ID | 6409513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1991402 |
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| End bp | 1991764 |
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| Gene Length | 363 bp |
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| Protein Length | 120 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642711742 |
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| Product | queuosine biosynthesis protein QueD |
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| Protein accession | YP_001990855 |
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| Protein GI | 192290250 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0720] 6-pyruvoyl-tetrahydropterin synthase |
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| TIGRFAM ID | [TIGR00039] 6-pyruvoyl tetrahydropterin synthase/QueD family protein
[TIGR03367] queuosine biosynthesis protein QueD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00372153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGATCA CCCAAGCCTT CCGCTTCGAA GCCGCCCACT ATTTGCCCAA CGTGCCGGAA
ACCCACCGCT GCAAGCGGAT GCATGGGCAT TCCTACCGGG TCGAACTGCA GCTCAGCGGG
CCGATCAATC CGGTCACCGG CTTCGTGCTG GACTTTTTCG AGATCGAGGC CGCGTTCGGG
CCGCTGCTGA AGCGGCTCGA CCATTATTGC CTGAATGAGA TCGAAGGGCT CGAAAACCCC
ACCGCGGAGA ATATCGCGAT CTGGATCTGG CGCCGCACCA AGCCGGAGCT GCCGCAGCTT
TGCGGCGTGC GGGTGTACGA GACCTCGGAC TGCTGGGCCG ATTACGCCGG CGAAGACGAC
TGA
|
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| Protein sequence | MKITQAFRFE AAHYLPNVPE THRCKRMHGH SYRVELQLSG PINPVTGFVL DFFEIEAAFG
PLLKRLDHYC LNEIEGLENP TAENIAIWIW RRTKPELPQL CGVRVYETSD CWADYAGEDD
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