Gene Rpal_1563 details

Gene Information

• Locus tag: Rpal_1563
• ID: 6409220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 1658127
• End bp: 1659938
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642711456
• Product: type I secretion system ATPase
• Protein accession: YP_001990571
• Protein GI: 192289966
• COG category: [R] General function prediction only
• COG ID: [COG4618] ABC-type protease/lipase transport system, ATPase and permease components
• TIGRFAM ID: [TIGR01842] type I secretion system ABC transporter, PrtD family

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGTCC GACGTCGTTC CGAGTTGAAT AACATGACCG CAGTATCGTC AGCCTTGCCA 
TCAACAGCGT CGAGGGACCT CCCTTCCTCC GCGATCGCCT CCTGCACGAG CGCCTTTCTG 
ATGGTGGGGC TGTTTTCTGC GGTACTCAAT CTGCTGATGC TTACCGGCTC GATCTACATG 
TTGCAGGTGT ATGATCGCGT CATTCCTTCG CACAGCGTTC CAACCCTGAT CGCGCTATCG 
ATTGCCGTCG CGGCAGCATA TGCATTACAG GGACTGTTCG ACCTTCTGCG CCAGCGCATT 
CTGACCCGGA TCGGAACAGC ACTCCACGCG GCTCTATGGG AACCGGTCGT CTGCAGTATC 
CTGCGTGGAC CGCTACGCGC TGGCGGCCCC GATCGCGGGC TGCAATTGTC GCAAGATCTG 
GATTCGGTGC GGTCGTTCCT GTCTGGGCTC GGTCCGACGA CATTGTTCGA CCTGCCGTGG 
ATGCCGCTTT ATCTCACGGG CTGCTTTCTG CTGCACCCCT ATCTCGGTTG GACGCTCGTC 
GCAGGCGCCG TGCTGCTGTT CAGCATCGCG CTGCTCACTG AAGTGCTGAC GCGCGCTCCC 
ACTCAAGACT CGTCACGCGC CGGTGCGATC CGCGGCATCC AGTTGGAAGC CGGCCGGCGC 
AATGCCGAAA TCGTCGCGGC GCTCGGAATG GAGCGACGAC TGGTCGCTCG GATCGGTGTC 
GCCAACAATG ATCTGGTCGC CGCGCAGCAG CGCAATGCCG ACATCGCCGG ATCGCTCGGG 
GCATTGTCGA AGACGCTGCG ATTCATGCTG CAATCGGCCC TGCTCGGCCT TGGCGCATAC 
TTGGTGATCG AAGGTCTTGC CAGCGGCGGT GTGATGATCG CCGCGTCGAT CATGGGCAGC 
CGGGCGCTCG CGCCGGTGGA ATTGGCGATT TCGATCTGGC GTCCATTCCT CGGCGCGCGA 
CAGGCATGGC AACGGCTGCG CGCGGCGCTG GCCAGCGGCG ATGCGTCGGC TCCGGACGTC 
GCTCCCGAAC GTGCTGTCAA ACGGCTGACG GTCGATCAGG TGGTGATCGC CGCGCCCGGT 
GGCACCACCG CAATCGTGCA GAGCGCCTCA TTCGCCCTCG AGGCCGGCCA GGCCGTCGGC 
GTTATCGGGC CTTCCGCCGC AGGAAAATCG ACGCTGGCGC GGGCGCTGGT CGGAATATGG 
CCGGTCGCAC GCGGCGAGAT TCGTCTTGAC GGCGCCACCC TCGATCAGTG GACGGCAGAA 
AGCCGCGGCA GCATGATCGG CTATCTGCCG CAAGACGTCG AACTGTTCGA CGGCACGGTC 
GCGGAGAATA TCGCGCGGTT CGATGCTGAG CTCGATGAGG CCGCGGTGAT CGCCGCAGCG 
AAAGCCGCCG GCGCCTACGA CATGATCCTG AAACTCCCTA AGGGATTCCA GATGCGGATG 
GGCGAAGCCG GCGCCACGCT GTCCGGCGGT CAGAGGCAGA GAATCGCGCT GGCGCGCGCG 
CTGTACAAGG ATCCGTTCAT GGTCGTGCTC GACGAGCCGA ATTCGAGCCT GGACGCCGAA 
GGCGACGCTG CGCTGACCGA CGCCATCCGG CGCGTTCGCG CGCGGGGCGG CATCGCTATT 
ATCATCGCGC ATCGGCCGGC GGCCCTCGCC GCGGTCGATC TCGTACTGAC CTTGGCGGCC 
GGTCAGATCC AGGCTTTCGG CCCGAAGGAT GAAGTGCTGC GCAAGTCACT CGCGGCTCAT 
CCTGCGGCAA GCGGTGCGGC GCTTCAGGCC GTGCCGGACC CGCGTTCGGT ACCGGCCGCA 
GCCGTCAGTT GA 

 

Protein sequence

MTVRRRSELN NMTAVSSALP STASRDLPSS AIASCTSAFL MVGLFSAVLN LLMLTGSIYM 
LQVYDRVIPS HSVPTLIALS IAVAAAYALQ GLFDLLRQRI LTRIGTALHA ALWEPVVCSI 
LRGPLRAGGP DRGLQLSQDL DSVRSFLSGL GPTTLFDLPW MPLYLTGCFL LHPYLGWTLV 
AGAVLLFSIA LLTEVLTRAP TQDSSRAGAI RGIQLEAGRR NAEIVAALGM ERRLVARIGV 
ANNDLVAAQQ RNADIAGSLG ALSKTLRFML QSALLGLGAY LVIEGLASGG VMIAASIMGS 
RALAPVELAI SIWRPFLGAR QAWQRLRAAL ASGDASAPDV APERAVKRLT VDQVVIAAPG 
GTTAIVQSAS FALEAGQAVG VIGPSAAGKS TLARALVGIW PVARGEIRLD GATLDQWTAE 
SRGSMIGYLP QDVELFDGTV AENIARFDAE LDEAAVIAAA KAAGAYDMIL KLPKGFQMRM 
GEAGATLSGG QRQRIALARA LYKDPFMVVL DEPNSSLDAE GDAALTDAIR RVRARGGIAI 
IIAHRPAALA AVDLVLTLAA GQIQAFGPKD EVLRKSLAAH PAASGAALQA VPDPRSVPAA 
AVS