Gene Rpal_1517 details

Gene Information

• Locus tag: Rpal_1517
• ID: 6409174
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 1598526
• End bp: 1600424
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642711411
• Product: multi-sensor signal transduction histidine kinase
• Protein accession: YP_001990526
• Protein GI: 192289921
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGGATCA TCGACCGAAG AAAGCGGCAG GCCGTGTTGG TGGTAGCCGT CGTCGCCTCG 
GTGCTGATCT TCGTTGCGGA TGCGCTGAGT CCAATCGATG GTGCGGTCGC GGTGCTCTAC 
ACCGGCGTCG TGCTGATGGT CGCGCCGCTA GGCCGCAAGT TCATCGTCGT GGCGGGCTAC 
ATCTCAGCGG TGCTGGCGCT CACGGCCTTT CTGTGGGGGC ATGCTTCCGA TCTGGTCGAC 
GGCGCATTGC TCCGGCTTGT CGTCAGCCTG GTCGCGATCC TCATCACCGT TCTGCTCTCG 
GTGCGCGACC GCTCCGCCCG AATTTCGCTG GCCGAGCAGG TGAGAATCCT CGAGGCGTCG 
CACGACACGG TGATCATTCG CGACTCAGCC GGCATCGTGC GTTATTGGAA CGAAGGCGCC 
GAGCGTCTGT ACGGCCGGTC CCGCGACCAG GCGATAGGAC GTCACTACGC CGAACTGTTC 
GACGAAAGCG CGCCGGTCGA CGAAATCGAC CGATCGATGC GGGAGGCCGG AAGCTGGTCC 
GGCGAGGTGG TACGCACGCG TCGCGACGGC GCTCGGTTGA TTCTGGCGAG CCGTTGGCTG 
CAGCGGCGCG ACCCGGAGGG ACGGGCGATC GGCGTCATCG AAGCCAGCGC CGACCTCACC 
GAGAGTCGCC GGGCGCAGGC GGAACAGCGC CGATCGGAGC GGCGGTACAG CACCATCTTC 
AATTCCGCGG GCTTTGCGGC GTTGGAATGC GATCTCAGCG ACGCATTGAG CGTGGTTCTG 
TCGGCCGGCG CCGACGTGGC GGCGTCGTTG CGTGCGGATC CGGCGCTGCT GGCGGCCGCG 
GTCGAACGCA TCGTCATCTG CGAGGCCAAT CCGGCCGCTC TCGAAATGTT CGACGCCGAC 
GGCCCCGGAG AACTGATCGT GGCCGAACTG CTGGCCTTCT CGATCCCGGA CGCTCGGCAG 
GCACTCGAGA CGATCTTCGT CGCGCTCACC ACCGGGGCCA CGCAGATCGA GACCGAGACG 
CGCTTCATCA CGCGGCGCGG ACGGACGATC GACGCGGTAC TGCGGTTGTC GGTTCTGCCG 
GACGGGACCG ACTGGTCACG GGTCCTGTTG ATGGCCTTCG ACGTGACCGA ACGCAACGAG 
GCGCGGACCA AGATCGAGCG CATTTCTGCG GAACTTGCCC ACGCCGGGCG GGTCTCGGTG 
CTCGGCCAAC TCGCGGCGTC GATCGCCCAC GAGGTCAACC AGCCGCTCGC CGCCATTATC 
AACTACGGCA AATCGGGCAA ACGCTGGCTG GCGCGGCCGA CCTCGGATAT CGGCGAGGTC 
GCCGATTGCC TCGACAAGAT CGTGTCGAAT GCCAACCGCG CTGCCGAGGT CGTCGGCCGC 
GTTCGCTTTC TCGCCCGCAA ATCCGCCCCG CTGACGGATT CGGTCGACCT GGTAGTGATG 
CTCCAGGACG CCATCGAGTT GCTAAGGCGG GAAATCCACA GTGTGAAGGC GACCGTGCGC 
GTCGAACTCA GCACGCCAAT CGCGATGATC GACTGTGACC GGGTTCAGGT GCAGCAGGTC 
GTCGTCAATC TGCTGATGAA TGCGCTGCAA GCGATGCGGG GGATCGACGG TCATCGCCAG 
ATCCTGATCC GCATCGAGGA CTCCGGCGAC ACCTTGACCG TTGCCGTGTG TGATACCGGG 
GTCGGCATTG CGGGCGAACC CGCTCGAATA TTCGAGCCGT TCTTCTCGAC GAAATCCGAC 
GGAATGGGCC TTGGACTGTC GATCTGCCGG ACCATCATCG AAGGCCAGGG GGGCCAGATC 
CTGGCCTCGA ACAACGATGG ACCGGGTGCC ACCGTGGCGT TTACCTTGCT GCGTAACAAC 
CCGGAAGAGG GGCGCCACAA TCGCCGTCTC ATATCTTGA 

 

Protein sequence

MRIIDRRKRQ AVLVVAVVAS VLIFVADALS PIDGAVAVLY TGVVLMVAPL GRKFIVVAGY 
ISAVLALTAF LWGHASDLVD GALLRLVVSL VAILITVLLS VRDRSARISL AEQVRILEAS 
HDTVIIRDSA GIVRYWNEGA ERLYGRSRDQ AIGRHYAELF DESAPVDEID RSMREAGSWS 
GEVVRTRRDG ARLILASRWL QRRDPEGRAI GVIEASADLT ESRRAQAEQR RSERRYSTIF 
NSAGFAALEC DLSDALSVVL SAGADVAASL RADPALLAAA VERIVICEAN PAALEMFDAD 
GPGELIVAEL LAFSIPDARQ ALETIFVALT TGATQIETET RFITRRGRTI DAVLRLSVLP 
DGTDWSRVLL MAFDVTERNE ARTKIERISA ELAHAGRVSV LGQLAASIAH EVNQPLAAII 
NYGKSGKRWL ARPTSDIGEV ADCLDKIVSN ANRAAEVVGR VRFLARKSAP LTDSVDLVVM 
LQDAIELLRR EIHSVKATVR VELSTPIAMI DCDRVQVQQV VVNLLMNALQ AMRGIDGHRQ 
ILIRIEDSGD TLTVAVCDTG VGIAGEPARI FEPFFSTKSD GMGLGLSICR TIIEGQGGQI 
LASNNDGPGA TVAFTLLRNN PEEGRHNRRL IS