| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1457 |
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| Symbol | fliF |
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| ID | 6409114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1540786 |
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| End bp | 1542402 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711356 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001990472 |
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| Protein GI | 192289867 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGAATC TGTTGGGTTT TCTCAAAGGC TTGGGAGCCG CCCGGCTGAT GGCGATGATT
GCCGTCACGG TTGCGCTGGT GGGATTCTTC GCCTTTGTCA TCATGCGGGT GTCGCAGCCG
CAGATGACGA CCCTCTATAC GGATCTCAGC GTCGAGGACT CCTCCAGCAT CATCAAGGAG
CTGGAGCGCC AGGGCATTCC GTTCGAGATG CGCAACGACG GCGCCATTCT GATGGTGCCG
AAGGACAAAG TGACGCGGCT GCGGATGAAG CTCGCCGAAG GCGGCCTCCC GAAGGGCGGC
GGCGTCGGCT ACGAGATCTT CGACAAGTCG GATGCGCTCG GCACCACCAG CTTCGTCCAG
AACATCAATC ATCTGCGCGC GCTCGAAGGC GAGCTGTCAC GCACCATCCG GGCGATCGAC
CGGGTGCAGG CGGCGCGCGT GCATTTGGTG CTGCCGGAGC GTCCGTTGTT CTCCCGCGAG
GCGCCGGAGC CGTCGGCCTC GATCGTGCTG CGCGTGCGCG GGGCGCTTGA GCCGCAGCAG
GTGCGCGCCA TCCGTCATCT CGTCGCCTCC GCCGTCAACG GCCTGAAGCC GCAGCGGGTG
TCGATCGTCG ACGAGGCCGG CCAGCTGCTG GCGGACGGCT CCGCCAGCGG CGAGCAGGTC
GAAGGCGCCA CCAGCGACGA GCGCCGCGCC GCGTTCGAAA AGCGGATGCG CAATCAGATC
GAGGGCATCG TCTCCTCGGT GGTCGGCTCC GGCCGCGCCC GCGTCCAGGT CTCCGCCGAC
TTCGACTACA ACAAGATCAC CCAGACCTCC GACAAATTCG ACCCCGAAGG CCGGGTGCTG
CGGTCGAGCC AGACCCGCGA AGAATCCGCC GCGACTTCGG CGGCGGACGG CCAGGTCACC
GTCAACAACG AGCTGCCCGG CGCGAACCAG GGCCAGGGTG CCGGCGCGCG CGACGTCAGC
AAGAAGTCGG AAGAGACCAA CAATTACGAG ATCTCCCGCG TCACCAAGAC CGAGGTCACC
GAGGCCGGCC GCGTCAACCG GCTGTCGGTC GCGGTGCTGG TCGACGGCGC CTACACCAAG
AACGACAAGG GCGAGCTGGT CTATGCAGAA AGGCCTAAGG AGCAGCTCGA CCGCATCGCC
GCGCTGGTGC GCTCGGCCAT CGGCTTCGAC CAGAAGCGCG GCGACCAGAT CGAAGTGGTC
AACCTGAAGT TCGCCGAGGC GCCGCAGGTC GAGAAGCTGC CGGAGCCGGC CGGGCTGATG
GGGATGTTCC AGTTCACCAA GGACGACATC ATGAACATGA TCCAGCTTGG GGTGATGTTC
CTGCTCGGCT TGGTGGTCCT GTTCATGGTG ATCCGCCCGC TGGTGAAGCG CATCCTCGCC
GCCGAGCCGG CGCCGGAAGC AGCCGGTGGC CTGCCGGCGC TGGCCGACGG CACCGTGCCG
CAGATCGGTG CCGATGGTCA GCCGGTGCCG GCCAGCGTGC CCAGCATGAT CGATATCGCC
CAGGTGCAAG GCCAGGTTCA CGCCCAGTCC GTGCATCGGG TCGGCGAACT CGCAGAACGC
AATCCCAACG AAACCGCCGC CATTATTCGT CAATGGCTGG CCGAACCCGC AACCTAA
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| Protein sequence | MQNLLGFLKG LGAARLMAMI AVTVALVGFF AFVIMRVSQP QMTTLYTDLS VEDSSSIIKE
LERQGIPFEM RNDGAILMVP KDKVTRLRMK LAEGGLPKGG GVGYEIFDKS DALGTTSFVQ
NINHLRALEG ELSRTIRAID RVQAARVHLV LPERPLFSRE APEPSASIVL RVRGALEPQQ
VRAIRHLVAS AVNGLKPQRV SIVDEAGQLL ADGSASGEQV EGATSDERRA AFEKRMRNQI
EGIVSSVVGS GRARVQVSAD FDYNKITQTS DKFDPEGRVL RSSQTREESA ATSAADGQVT
VNNELPGANQ GQGAGARDVS KKSEETNNYE ISRVTKTEVT EAGRVNRLSV AVLVDGAYTK
NDKGELVYAE RPKEQLDRIA ALVRSAIGFD QKRGDQIEVV NLKFAEAPQV EKLPEPAGLM
GMFQFTKDDI MNMIQLGVMF LLGLVVLFMV IRPLVKRILA AEPAPEAAGG LPALADGTVP
QIGADGQPVP ASVPSMIDIA QVQGQVHAQS VHRVGELAER NPNETAAIIR QWLAEPAT
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