| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1356 |
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| Symbol | |
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| ID | 6409013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1428142 |
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| End bp | 1430352 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 642711255 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_001990371 |
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| Protein GI | 192289766 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.284872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCGCG ACACCCGTAA AGACAACGAC TCTGCGCGGG GCCGCCGCGA CAGGCCCGCC
GGCGGTAAGG GCGGTTTCGG CGGCAGAGGC CCGGCCGGCG GCAAAGGCCC GGCGGGCAGC
AAGGGAGCGT TCGGCGGCAA GGGCCGCTCG GGTGCGGCCA GGGGGCCGGA GAAGAAATTC
GCCAAGCGCG CCGGCGAAGG TGCCGGCGAG GGACGTGGCG ACAAGACCTA CGCCAAGAAG
TCGTTCGGCG GTGACGCCAA GCGCTCGTTC GGCGGCGAGG GCAAGCGGCC CTATGCCAAG
CGCGACGGCG CCGCGCCGCG CCGCGATTTC GCCGACCGTC CGCGCCGCGA TGACGGCGAT
GCGCCGCGTC CGCGTTTCAA CCGCGACGAC CGTCCCGCGC GCAGCGGCGG CGACCGTCCC
GAGCGCGGCC CTCGCAAGGA ATTCGGCGAT CGTGCGGAGC GCGGTCCGCG CAAGGAGTTC
GGTGACCGTC CCAAGCGCGA TTTCGGCGAC CGGCCGAAGC GCGACTTCAG TGATCGCCCC
AAGCGCGATT TTGCGGATCG GCCGAAGCGC CCCTTCAAGC GCGACGGCGA GCCGGGTCGC
GACCGCGGCG ACGACAAGCC GTGGCGCGCC CGCGAGGACC GGCCGGCGCG TGCCGGTGGC
GATCGCGACC GCAAGTTCGA CAAGGGCGGC TTCGACAAGC CGCGGTTCTC CAAATCGCGC
GATGACAAGC CGCGCTTCGA CCGTGATCGA GGCGACAAAC CCCGGTTCGA CAAGCCCCGC
GGCGACAAGC CGCGGTTCGA TCGCGGCGAG CGTTCCGAGC GCCCCGAACG CAGCGGCGAC
CGGCCGAAAT TTTCCCGGCC GCGCGACGGC GATCGCGGCG AACAGCGTCC GTTCCGTGAG
CGCAGCTTCG ATCGTCCGCG CGAGGATCGG CCGCGCAGTG ACCGTCCGCG CAGTGACCGC
CCGCGTGAGG ACCGTCCGCA ACGCGACCGT GCCGCCAGGC ATGGCGACTG GCACGAGCAT
CCGAAGAACG AGGGGCGTGG CTTCGATCGT CCGCGCACGA GCCGCGACGA CGAGCGCAGC
TTCGACCGCC CGCGCCGCGA CAACGAGGAC GGCGGCCGGA TCTTCGCCAA GCGCCCGGCG
TTCGGCGGCC GCGGCGCGTT CCGCAAGCAG GATCCGGCAG CTTCCAAGCG TAAGCCGGCG
GCGCCGGCGA AATCCGACAA GGCCGGCGAG CGCATCGCCA AGGTAGTGGC GCGCGCGGGG
CTGTGCTCGC GCCGCGACGC CGAGGCGTGG ATCACGGAAG GGCGTGTCAC TGTCAACGGC
AAGGTGATCG ACAGCCCGGC GCTCGACGTC AAAGCGAGCG ACGTCATCAC CATCGACGGC
AAGCCGTTGC CGGAGCGCGA ACGCACGCGG CTGTTCCTGT ATCACAAGCC GCGCGGCCTG
ATGACGACGC ACAGCGATCC GGAAGGTCGC CCGACGGTGT TCGACCATCT GCCCGAAGGG
CTACCGCGGC TGATCTCGAT CGGCCGGCTC GACTTCAACA CTGAAGGCCT GCTGCTGCTC
ACCAATGACG GCGGCCTCGC ACGCGCGCTG GAGCTGCCGG AGACCGGCTG GCTGCGGCGC
TACCGCGTCC GCGCGCATGG CGAGATCACC CAGGCGCAGC TCGACGAGCT GCAGAACGGC
ATCGAGGTCG ACGGCGTGCA GTACGGCCCG ATCGAGGCCA AGCTGGAGCG TGACCAGGGC
GCCAATGTCT GGCTGGTGTT CGCGATTCGC GAGGGCAAGA ACCGCGAAGT CCGCAACGTG
CTGGCGCATC TCGGTCTCGA GGTGAACCGG CTGATCCGCG TCTCCTACGG CCCGTTCCAA
CTGCTCGAAC TCGGTGAAGG CGAGGTCGAC GAGGTCAAGA CCCGTGTGCT GCGCGACCAG
CTCGGCGAGA AGGTGATTGC GCTCGCCGGT TGCGACTTCG CCGGCCCATC GCCGAGTGAG
ACCAAGCCGA AGCCGCGCGC CGGCAAGGCC GTGTCCGCCG AGGAGTGGGC GGTGGCCGAT
GCTGCACCCG CGCCGAAGAA GACGATCACC AAGCGCGGCG CGGTCGAAGA TCGCAAGGGC
CGCAAGGTCA AGGTCGAACG CACCGCCAGC GAAGGCGGCG ATCGCCCGCT GTCGCGCGGC
CCCGCCCGCC GCTACCACGG CAAACGCGAC CTCGCGCCGC GGGACGAGTG A
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| Protein sequence | MPRDTRKDND SARGRRDRPA GGKGGFGGRG PAGGKGPAGS KGAFGGKGRS GAARGPEKKF
AKRAGEGAGE GRGDKTYAKK SFGGDAKRSF GGEGKRPYAK RDGAAPRRDF ADRPRRDDGD
APRPRFNRDD RPARSGGDRP ERGPRKEFGD RAERGPRKEF GDRPKRDFGD RPKRDFSDRP
KRDFADRPKR PFKRDGEPGR DRGDDKPWRA REDRPARAGG DRDRKFDKGG FDKPRFSKSR
DDKPRFDRDR GDKPRFDKPR GDKPRFDRGE RSERPERSGD RPKFSRPRDG DRGEQRPFRE
RSFDRPREDR PRSDRPRSDR PREDRPQRDR AARHGDWHEH PKNEGRGFDR PRTSRDDERS
FDRPRRDNED GGRIFAKRPA FGGRGAFRKQ DPAASKRKPA APAKSDKAGE RIAKVVARAG
LCSRRDAEAW ITEGRVTVNG KVIDSPALDV KASDVITIDG KPLPERERTR LFLYHKPRGL
MTTHSDPEGR PTVFDHLPEG LPRLISIGRL DFNTEGLLLL TNDGGLARAL ELPETGWLRR
YRVRAHGEIT QAQLDELQNG IEVDGVQYGP IEAKLERDQG ANVWLVFAIR EGKNREVRNV
LAHLGLEVNR LIRVSYGPFQ LLELGEGEVD EVKTRVLRDQ LGEKVIALAG CDFAGPSPSE
TKPKPRAGKA VSAEEWAVAD AAPAPKKTIT KRGAVEDRKG RKVKVERTAS EGGDRPLSRG
PARRYHGKRD LAPRDE
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