Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1307 |
Symbol | |
ID | 6408964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1373410 |
End bp | 1374315 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642711206 |
Product | RNA polymerase sigma factor SigJ |
Protein accession | YP_001990322 |
Protein GI | 192289717 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAGGC CTCCTGATCC AGCTACGTCC GACGATGCCG CAGCGAGCTT CGCGCCGCTG CGGCCGCGGC TATTGCGCGT CGCCTATCGG ATGCTGGGCT CGATCAGCGA GGCCGAAGAC GTCGTGCAGG ACGCTTACTT GCGCTGGCAC CGCAGCGATC GCCGCGACGT TCGCGATCCG GCGGGCTTTC TCACGCGCAC CGTCACGCGC CTGTGCCTCG ACGTGCTGAA GTCGGCTCGG CAGCGGCGCG AGACCTATGT GGGGCCGTGG CTGCCGGAGC CGATCATTGC CCCGGAGCTT GAGCCTGATG GCGATGACAT CACCCTCACT TTGATGCTGG CGCTCGAGCG GCTGTCGCCA CTGGAGCGGG CCGCATTCTT GCTCCACGAC GTGTTCGGTG TCGGCTTCGA TGAGATCGGA ACGACGCTCG GACGTGATGC CGCTGCCTGC CGCCAGCTTG CGGCGCGAGC CCGGGCACAT GTCCGTGCTG AGCGGCCGCG CTTTCCGGTC TCGGCAGAGC AGGGGCAGGC GATCGCCGCG GCGTTCTTCC AGGCTTCGCG GAGCGGCGAT CTTGGCGCGC TGACGTCGCT GCTCGCGAAC GAGGTCGTCT TTGTCAGCGA TGGCGGTGGC AAACGGCCGG CAGCGATCAA CCCGGTGCAT GGCAGCGATC GGGTGACACG CCTGCTTGTC GGCATCGCGC GTAAGGCGCC GCCGGGGGCG AGTTCGCTGC TTGCGGTTCA GCTGATTGAC GGCCTGCCGG GCTTCGTCTC GCGCGAGCCG GACGGGCTGA TCCAGACCAC GGCGCTCGAA ATGACGGATG GTCGGATCGT CGCGATCTAT GTGGTCCGGA ACCCTGACAA GCTCCGGCAT CTGATCCCCG TGCAGCCCTC CGCCGGTCTG CACTGA
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Protein sequence | MPRPPDPATS DDAAASFAPL RPRLLRVAYR MLGSISEAED VVQDAYLRWH RSDRRDVRDP AGFLTRTVTR LCLDVLKSAR QRRETYVGPW LPEPIIAPEL EPDGDDITLT LMLALERLSP LERAAFLLHD VFGVGFDEIG TTLGRDAAAC RQLAARARAH VRAERPRFPV SAEQGQAIAA AFFQASRSGD LGALTSLLAN EVVFVSDGGG KRPAAINPVH GSDRVTRLLV GIARKAPPGA SSLLAVQLID GLPGFVSREP DGLIQTTALE MTDGRIVAIY VVRNPDKLRH LIPVQPSAGL H
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