Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1155 |
Symbol | |
ID | 6408811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1225769 |
End bp | 1227562 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642711053 |
Product | nickel-dependent hydrogenase large subunit |
Protein accession | YP_001990170 |
Protein GI | 192289565 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.295857 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAACG TCACGACTCC CAACGGCTTC AAGCTCGACA ATGCCGGCCG CCGCGTCGTC GTCGATCCGG TGACCCGGAT CGAGGGACAC CTGCGCGTCG AGGTCAATGT CGACAGCAAC AACGTCATCC GCAATGCGGT GTCGACCGGC ACGATGTGGC GCGGCATCGA GGTGATCCTC AAGGGCCGCG ATCCGCGCGA CGCCTGGGCG TTCACCCAGC GGATCTGCGG CGTCTGCACC GGCACTCACG CACTCACGTC GGTGCGCGCG GTCGAGAACG CGCTGAAGAT CAACGTGCCG GAGAACGCCA ACACCATCCG CAACATCATG CAGCTCGCGC TGTATGTGCA TGACCATTTG GTCCACTTCT ATCATCTGCA CGCGCTCGAC TGGGTCGACG TGGTGTCGGC CCTGAAGGCC GACCCAAAAG CCACCTCAGC GCTGGCGCAG TCGATCTCGC CGTGGCCGAT GTCGTCGCCG GGCTACTTCA AGGATCTGCA GATCCGCCTG ACCAAGTTCG TCGAGAGCGG CCAGCTCGGC CCGTTCAAGA ACGGCTATTG GGGCCATCCC GCCTACAAGC TGCCGCCCGA AGCCAATCTG ATGGCGGTGG CGCACTATCT CGAGGCGCTC GATTTCCAGA AGGAAATCGT CAAGATCCAC ACCGTCTACG GCGGCAAGAA CCCGCATCCG AACTGGCTGG TCGGTGGCGT GCCGTGCTCG ATCAATGTCG ATGGTACCGG CGCGGTCGGC GCGATCAACA TCGAGCGGCT CAATCTGGTG TCGTCGATCA TCGACCAGAC CGTCGCCTTC GTCGAGCAGG TCTATGTGCC CGATCTGGTG GCGATCGCCG GATTCTATAA GGACTGGCTG TATGGCGGCG GGTTGTCGTC GAAGTCGGTG ATGTCCTACG GCGACCTGCC GGAATACGCC AACGACTATT CCGACAAGAG CCTGATGCTG CCGCGCGGCG TGATCATCAA CGGCAATCTC AACGAGGTGC TGCCGGTCGA TCTGAGCGCG CCGGACCAGA TCCAGGAATT CGTCACTCAC TCCTGGTACA AATGCGCCGA TGAGGGCAAG GGCCTGCATC CGTATGACGG CGTCACCGAG CCGAACTTCG TGCTCGGCCC CAACGCCAAG GGCACCCGCA CCAACATCGA GGCGCTGGAC GAATCTGCCA AATACTCGTT CCTCAAGGCG CCGCGCTGGA AGGGGCACGC GGTCGAGGTC GGGCCGCTGG CGCGCTACAT CATCGGCTAC GCCCAGGGCA AGCCGGAGTT CAAGGAGCCG ACCGAAAAGC TGCTGAAGAC GCTCGACGTG CCGGTCACCG CGCTGTTCTC GACGCTCGGC CGCACTGCAG CGCGCGGGCT CGAATGCCAG TGGGCGGCGC GCAAGCTGCG CGCGGCGCAG GACAAGCTGA TGGCCAGCAT CAAGGCCGGC GATCTATCCA CTGCCAATAC CGACAAATGG CACCCGTCGA GCTGGCCGAA AGACGTCAAG GGCGTCGGCT TCACCGAGGC GCCGCGGGGC GCACTGGCGC ACTGGGTCAA GATCAAGGAC ACCCGGATCG ACAATTATCA GTGCGTGGTG CCGACCACCT GGAACGGCAG CCCGCGCGAT CCGCAAGGCA ACATCGGTGC ATTCGAAGCG GCGCTGCTCG ACACGCCGAT GGCCGACCCC AACCAGCCGC TGGAGATCAT CCGCACGCTG CATTCGTTCG ATCCGTGCCT CGCCTGCTCG ACCCACGTGA TGAGCGAGGA CGGTCAGGAA ATGGCACAGG TCAAGGTCAG CTGA
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Protein sequence | MTNVTTPNGF KLDNAGRRVV VDPVTRIEGH LRVEVNVDSN NVIRNAVSTG TMWRGIEVIL KGRDPRDAWA FTQRICGVCT GTHALTSVRA VENALKINVP ENANTIRNIM QLALYVHDHL VHFYHLHALD WVDVVSALKA DPKATSALAQ SISPWPMSSP GYFKDLQIRL TKFVESGQLG PFKNGYWGHP AYKLPPEANL MAVAHYLEAL DFQKEIVKIH TVYGGKNPHP NWLVGGVPCS INVDGTGAVG AINIERLNLV SSIIDQTVAF VEQVYVPDLV AIAGFYKDWL YGGGLSSKSV MSYGDLPEYA NDYSDKSLML PRGVIINGNL NEVLPVDLSA PDQIQEFVTH SWYKCADEGK GLHPYDGVTE PNFVLGPNAK GTRTNIEALD ESAKYSFLKA PRWKGHAVEV GPLARYIIGY AQGKPEFKEP TEKLLKTLDV PVTALFSTLG RTAARGLECQ WAARKLRAAQ DKLMASIKAG DLSTANTDKW HPSSWPKDVK GVGFTEAPRG ALAHWVKIKD TRIDNYQCVV PTTWNGSPRD PQGNIGAFEA ALLDTPMADP NQPLEIIRTL HSFDPCLACS THVMSEDGQE MAQVKVS
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