Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1090 |
Symbol | |
ID | 6408746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1156204 |
End bp | 1157655 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642710996 |
Product | outer membrane efflux protein |
Protein accession | YP_001990113 |
Protein GI | 192289508 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATGC CGCTAACCGC TCGATCCGGC CTTTCTCATC ACCGAGCCCG CACGACGCTC GGCGTATTGT CGATGTCGAT GTTGCTCGCC GGGTGCGCAG CCTTTTCCCC CGATGCCGGC ATGTCAGGCG TCGCCGACAT TGCCGCGAGG ACCATCACGA AGGATGTAGT TGCGATCCGC TCGATCGAGG ACGTCGAGCG GGTTAACGTG GCGGTCTCGG CACTGCTGCG GCGAAGCCTG ACCGTCGACG CTGCGGTTCA GGTAGCATTG TTGAACAATC GTGGCCTGCA GGCTGCCTAC AATGAGCTCG CACTGGCGGA AGCGGACTCC ATCAGCCAAA GCCTGCCTCC GAACCCGACG TTTTCTCTCT CCAGAATCGC CGGAAATGGG GGGAGTGAGA TCGAGGGCCA GATCGTTGGC GATATCCTCG CGCTCGCGAC GTTGCCGTTT CGTACGGAGA TCGCGCGTGA ACGTTTCCAC CAAGCTCAAT TGCGCGCGGC TCTGGAAACA CTACGGCTCG CCGCTGACGT CAGACGAGCA TATTACCAGG TGGTGGGTAC GAACGAACTG GTCGGACTTC TGGCCGAGAC TAAGACCACT GCCGAGACGA TCGCTCAGCT CGCGGAAAAG CTTGGACAGA CCGGCTCGCT CAATAAGCTC GATCAAGCGC GCGAACAGGT ATTTTACGCC GAGATCACTA CCGACCTCGC TACCGCGCGG CAACGCGCTG CATCCGAGCG CGAGCGGATC GCAAGACTGC TCGGTGTTTG GGACGGTCAA CTCGATTTCA AGCTGCCCAA GGTTCTTCCG GCCCTGCCGC GCAGCCCGAG GCCGTTACCC AACATCGAAG TCGAGGCCGT CAGCCGTCGC GTCGATCTTC AGATGGCCCG CATCGAACTC GGAACGTTGG CCAAGGCTCT CAATCTCACC GAGGCGACCC GCTTCGTTAC GTTGCTCGAC GTCGCCGGCA TCTCCCGGAA GACCAAGGAC CCCGAAAGCC CCGCCTTCCG CGAGCGAGGA TTCGACGTCC AATTTCAGAT ACCGATCTTC GATGGGGGCG AGGTTCGCGT CCGCCAGGCC GCTGAAATCT ACAACAATGC ATTTAATCGC CTGACCGAGA AGGCGGTCAA CGTGCGTTCC GAGGCACGTG ATGCGTACCG CGTCTATCGC TCCACTTACG ATATCGCCGG CCACTACCAG CGGGAAGTGG TGCCGCTCCG GAACATCATC TCCGATGAAG CTCAACTGCG CTACGGCAGC ATGCAGATCG ACGTGTTCGC GCTTCTCGCG GAAGCGAAGC TGAGAATCTC GGCCCAACGA GCATCGATCG AAGCCAAACG CGATTTCTGG TTGGCGCAGT CGGAACTGCA GACCGCAGTC AACGGCGGAG GCCGCTCCGA CAGTCAACAG GAGAGCCGTT CACCAACCAA TTCGCTGGCA AACGGCGGAT AA
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Protein sequence | MKMPLTARSG LSHHRARTTL GVLSMSMLLA GCAAFSPDAG MSGVADIAAR TITKDVVAIR SIEDVERVNV AVSALLRRSL TVDAAVQVAL LNNRGLQAAY NELALAEADS ISQSLPPNPT FSLSRIAGNG GSEIEGQIVG DILALATLPF RTEIARERFH QAQLRAALET LRLAADVRRA YYQVVGTNEL VGLLAETKTT AETIAQLAEK LGQTGSLNKL DQAREQVFYA EITTDLATAR QRAASERERI ARLLGVWDGQ LDFKLPKVLP ALPRSPRPLP NIEVEAVSRR VDLQMARIEL GTLAKALNLT EATRFVTLLD VAGISRKTKD PESPAFRERG FDVQFQIPIF DGGEVRVRQA AEIYNNAFNR LTEKAVNVRS EARDAYRVYR STYDIAGHYQ REVVPLRNII SDEAQLRYGS MQIDVFALLA EAKLRISAQR ASIEAKRDFW LAQSELQTAV NGGGRSDSQQ ESRSPTNSLA NGG
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