Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1006 |
Symbol | |
ID | 6408661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1069736 |
End bp | 1070308 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710920 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_001990038 |
Protein GI | 192289433 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.217455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCGTA ATTCTCCTAA ATCCCGACCT GGCGGTCGCG CGGCGCGGAC AAAAAATGCT ACGTTTCAAG CAGTTGCGGA GCTCGTCGCG GAAAAGGGAC ATGGGGCGGT AAGCATGACC GACGTGGCCG AGCGAGCCGG AGTCGCGGCG ACGAGCCTCT ATCGGCGCTG GGGAGACATC GGCTCGCTGA TCCGCGAGGT CGCGGTCGAG CAGTTGATGC GCGACTATCC CATTCCCGAC ACGGGATCGA TCGAGGGCGA TCTCCGCCAG TGGGCGCGAT CGATCGCTTT GACCTTAAGC CGGCCCGAAG GTTCGTCTTT CTTTCGCGCT TTCGTCGCCA CCGCCACGCC GACACATGCC GGGACCGTGG CGCCGCCGGA AGCGTTGGCA CGGCGGATCG AGCAGATTGA GCAGATGCTG GCGCGCGCGA ATGCCCGCGG CGAACGCGCG CTCGCCGTCG ATGACGTCAT CGACTTTCTG CTCGCCCCGC TGTTCGTGCG CGCGCTTTTC GGCACGCCGC TCGACGAGGA AGCGGCCGAG GCTCTAGCCG AAAGGTTGCT GAAGAGATGC TGA
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Protein sequence | MQRNSPKSRP GGRAARTKNA TFQAVAELVA EKGHGAVSMT DVAERAGVAA TSLYRRWGDI GSLIREVAVE QLMRDYPIPD TGSIEGDLRQ WARSIALTLS RPEGSSFFRA FVATATPTHA GTVAPPEALA RRIEQIEQML ARANARGERA LAVDDVIDFL LAPLFVRALF GTPLDEEAAE ALAERLLKRC
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