Gene Rpal_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1006 
Symbol 
ID6408661 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1069736 
End bp1070308 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content65% 
IMG OID642710920 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001990038 
Protein GI192289433 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.217455 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCGTA ATTCTCCTAA ATCCCGACCT GGCGGTCGCG CGGCGCGGAC AAAAAATGCT 
ACGTTTCAAG CAGTTGCGGA GCTCGTCGCG GAAAAGGGAC ATGGGGCGGT AAGCATGACC
GACGTGGCCG AGCGAGCCGG AGTCGCGGCG ACGAGCCTCT ATCGGCGCTG GGGAGACATC
GGCTCGCTGA TCCGCGAGGT CGCGGTCGAG CAGTTGATGC GCGACTATCC CATTCCCGAC
ACGGGATCGA TCGAGGGCGA TCTCCGCCAG TGGGCGCGAT CGATCGCTTT GACCTTAAGC
CGGCCCGAAG GTTCGTCTTT CTTTCGCGCT TTCGTCGCCA CCGCCACGCC GACACATGCC
GGGACCGTGG CGCCGCCGGA AGCGTTGGCA CGGCGGATCG AGCAGATTGA GCAGATGCTG
GCGCGCGCGA ATGCCCGCGG CGAACGCGCG CTCGCCGTCG ATGACGTCAT CGACTTTCTG
CTCGCCCCGC TGTTCGTGCG CGCGCTTTTC GGCACGCCGC TCGACGAGGA AGCGGCCGAG
GCTCTAGCCG AAAGGTTGCT GAAGAGATGC TGA
 
Protein sequence
MQRNSPKSRP GGRAARTKNA TFQAVAELVA EKGHGAVSMT DVAERAGVAA TSLYRRWGDI 
GSLIREVAVE QLMRDYPIPD TGSIEGDLRQ WARSIALTLS RPEGSSFFRA FVATATPTHA
GTVAPPEALA RRIEQIEQML ARANARGERA LAVDDVIDFL LAPLFVRALF GTPLDEEAAE
ALAERLLKRC