Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1001 |
Symbol | |
ID | 6408656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1063767 |
End bp | 1065305 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710915 |
Product | UbiD family decarboxylase |
Protein accession | YP_001990033 |
Protein GI | 192289428 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAGCC GCGTCAAACC GCCCTTCCCT GATCTGCGTG CATTTAGTGG CTATCTCGAA TCACGCGGAC AGTTGCACCG CATCCGCAAG CCGGTGTCGG TGGTCCATGA CCTCACAGAA ATCCATCGCC GCGTGCTGCA TGCCGGTGGC CCGGCACTCC TGATCGAAAA CCCGATCAAG GCCGACGGCA CGCCGTCCGA GATGCCGATC CTGGTCAATC TGTTCGGCAC CGTCGAACGG GTGGCCTGGG GCCTCGGCAT TTTGCCGGAG AATCTATCGC GGCTCGGCGA GGCGCTCGCC GAAATGCGAG AGCCGGCACC GCCGCAGAGC CTGACCGACG CTTTGAGCAA GCTGCCGATG GCCAAGGCCG CGCTGGCGAT GCGGCCGAAG CTGGCGAAAT CGGCGCCGGT GCAGGAAGTG GTGCTGACCG GCGACGCGGT CGATCTCGGT CGGCTGCCGG TGCAGATCCC CTGGCCCGGA GAACCGGCAC CGCTGATCAC CTGGGGCCTC GTCTTCACCA AGCCGCCGCC CGGCGCGCAC GGCACCGACA ATGTCGGCGT CTACCGGATG CAGGTGCTGG GCAAGGATCG CCTGATCATG CGCTGGCTGG CGCATCGCGG CGGAGCCAAG CACCACCACC AGTGGAAGGC CGACAAGCGC GAGATGCCGG TCGCGATCGT GATCGGCGCC GATCCGTCGA TGATTCTCTC GGCGGTGCTG CCGCTGCCGG AGACGGTGTC GGAGATCAAA TTCGCCGGCC TGCTCGGCGG CGAGCGTCCG AGCCTGACGC CGTGCCAGAC CATTCCGATC AGCGTGCCAG CCGATGCCGA GATCGTGCTG GAAGGCTTCG TGTCACCGAC CGAGACCGCG CCGGAGGGGC CGTATGGCGA CCACACCGGC TATTACAACG CGGTCGAGGA ATTCCCGGTG ATGCGGATCA CCGCGATCAC CATGCGCCGG CATCCGATTT ATCTGTCGAC CTATACGGGA CGGCCGCCGG ATGAGCCATC GCGACTTGGC GAGGCGTTCA ACGACGTGTT TCTTCCGGTC GCGCGGCGGC AATTCCCCGA GATCGTCGAT CTGTGGCTGC CGCCGGAAGC GTGTTCCTAT CGGATCGCCG TCGCCTCGAT CAAGAAACGC TATCCCGGCC AGGCGCGCCG GCTGATGATG GGGCTGTGGT CGATGCTGCC GCAGTTCAGC TACACCAAGC TCCTGATCAT CGTCGACGAC GACGTCGATG TCCGCGACTG GGCCGACGTG ATGTGGGCGG TGTCGACACG CTGCGACACC TCGCGCGACA TGGTGTCGAT CAGCGACACC CCGATCGATT ATCTCGACTT CGCCTCGCCG AAATCCGGAC TCGGCGGTAA GCTCGGCATC GACGCCACCA ACAAGATCGG CACCGAGACC GAGCGCGAGT GGGGCAAGGT GCTGGAGATG GACAAGGACG TGATTGCACG GGTCGATGCG ATGTGGACCA GCCTCGGACT GTCGCCGGAA CATCAACCGG CGGCCGGGCA ACGCCGGCTG ATCCGATGA
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Protein sequence | MLSRVKPPFP DLRAFSGYLE SRGQLHRIRK PVSVVHDLTE IHRRVLHAGG PALLIENPIK ADGTPSEMPI LVNLFGTVER VAWGLGILPE NLSRLGEALA EMREPAPPQS LTDALSKLPM AKAALAMRPK LAKSAPVQEV VLTGDAVDLG RLPVQIPWPG EPAPLITWGL VFTKPPPGAH GTDNVGVYRM QVLGKDRLIM RWLAHRGGAK HHHQWKADKR EMPVAIVIGA DPSMILSAVL PLPETVSEIK FAGLLGGERP SLTPCQTIPI SVPADAEIVL EGFVSPTETA PEGPYGDHTG YYNAVEEFPV MRITAITMRR HPIYLSTYTG RPPDEPSRLG EAFNDVFLPV ARRQFPEIVD LWLPPEACSY RIAVASIKKR YPGQARRLMM GLWSMLPQFS YTKLLIIVDD DVDVRDWADV MWAVSTRCDT SRDMVSISDT PIDYLDFASP KSGLGGKLGI DATNKIGTET EREWGKVLEM DKDVIARVDA MWTSLGLSPE HQPAAGQRRL IR
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