| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0984 |
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| Symbol | |
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| ID | 6408639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1048059 |
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| End bp | 1050938 |
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| Gene Length | 2880 bp |
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| Protein Length | 959 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710898 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001990016 |
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| Protein GI | 192289411 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTCTAA TCAGATGCCT CGCGCTGCTG GCGCTGGGCG TGATGTTGGT TGCGGCTGCT
CCGCAGGCTC ACGCCCTCGA TGCCGTCAGT GTCCGCAGCG ACGCGCCGGC GATCGACCTC
ACCGGTGTGC TGGAGCATCT GCACAGCGAC AACGACCGGG TTCAGATTTC CACCGCGCCC
GGCAATGACG GCATCGTCCG CCGCGTCGAG GTGCGCGCCC GCGAAGGCGG TCAGAACTGG
GTGGTGTTCG CGCTCGCCAA CAACTCCGAC GACCAGCTCG ATCGTTTGAT CGTAGCGCCG
CATTATCGAA TGGTCGGCTC CGGACTGTTG TGGCCCGACC TCGGCATGTC GCGCATTGCC
ACCATCACGC CGTCGACCGG CGACCGCCCC GAGCGGCAGG ACAGCGCGAC CGCCGACATC
TTCCGCGTCA CGCTCGATCC CGGCTCGGTG ATCACCTTCG TGGCCGAGCT GCGCACCGAC
AAGCTGCCGC AGCTCTATCT GTGGGAGCCG GAAGCCTACA AGGACAAGGT CAACTCGTTC
ACGCTGTACC AGGGCATCGT GATCGGCATC TCCGGCCTGT TGGCGCTGGT GCTGACCATC
CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCGGCCGCTG CGGCGCTGGC CTGGGCGGTG
CTGGTCTATA TCGGCATCGA TTTCGGCTTC TGGGGCAAGG TGCTGGACAT GTCGTCCGGC
GCCGAACGGG TTTGGCGCGC TTCGGGCGAA GCGATCCTTG CGGCAACGCT GCTCGTCTTC
CTGTTCGCCT ATCTCAATCT CAGTCGCTGG CACGTCCGCT ATTCGCACAT CACGCTGGGA
TGGCTCGCCT TCCTTGGCTC GCTGGTGGCG CTGGCGCTGT TCGATCCGGC GGTCGCGTCC
GGCATCGCCC GGATTTCCCT GGTGGCGATC GCGTTCGCCG GCTTCGCGCT GATCGTCTAT
CTGTCGACCC ACGGCTTCGA CCGCGCCGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG
GTGTGGGTGG TGGCATCCGG CATGGCGGTG GCAGGCACCG TCACCAACGA CATCGTCGGC
CCGGCGCTGC TCGGCGGCCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC CGTGATGCAG
CACGCGTTCT CGGGCGGCGG CGCCACTGGC GGGGTGATCT CCGACGTCGA GCGCCGCGCC
CTGGCGCTGA TCGGCTCCGG CGATCTGATC TGGGATTGGG ATGTCTCGGC CGACAAGGTG
TTCACCAGCC CCGAGACCGA AGCGCTGCTC GGCCTGAAGC GCGGCGCGCT GGAAGGCTCC
GCGGCGAGCT GGCTCGAAGT GCTGCACCCG CTCGACCAGG ACCGCTTCCG CGCCGCGCTC
GACAGCGTGC TCGACCAGCG CCGCGGCCGG CTGACGCAGG ACTTCCGGCT GCGTACCCCG
GACGGCCACT TCATGTGGTT CTCGCTGAAG GCGCGCCCGG TGGTCGGCAC CGACGGCGAA
GTCACCCGCG TGGTCGGCAC GTTGACCGAC GTCACCGAAA TCAAGAACGC CGAAGAGCGG
ATGCTGCACG ACAGCGTGCA CGACAACCTT ACCGGCCTGC CCAACCGCAA GCTGTTCATC
GACCGGCTCG GCGCGGTGTC GAACTTCGCC AAGACTATGC CGACGCTGCG ACCGACCCTG
ATGGTAATCG ACCTTGATCG CTTCAAGCAG GTCAACGATT CCGTCGGCAT CGCGGTCGGC
GATTCGATCC TGCTGACGCT GGCGCGCCGG CTCAGCCGCA TCCTGAAGCC GCAGGACACG
CTGGCGCGGA TCGCCGGTGA TCAGTTCGGG CTGATCCTGC TGTCGGAGCA GGACCCGGCC
AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCA AGGCGCCGAT CGCGTTCAAC
GACCGCGAGA TCTTCCTCAC CGCCTCGATC GGCCTCGCCC TGTCCGACCC GCAGACCCAG
CTGTCCGACG AGATCATCAA GGACGCCGAG CTGGCGATGT ATCACTCCAA GCGGATCGGC
GGCGACCGCA TCGACGTTTA CAAGCCGGCA ATGCGGGCGC GGAAGTCGGA CCGGCTGACG
CTGGAATCCG AACTGCGCCG GGCGATCGAG CGCAAGGAAA TCACCATCCT GTACCAGCCG
ATCGTGCGGC TCGAGGATCG GTCGATCGCA GGCTTCGAAG CACTCGCGCG CTGGGATCAT
CCCAAGCTCG GACGGATGTC GCCAAGCGAG TTCATCTCGA TCGCCGAAGA GATCGGGCTG
ATCGTCGAAC TCGGCACCTT CGTGCTCGAC CAGACCGCCA AGCAGCTCTC GATCTGGCAG
CGTGCGATGC GCGCCCGCGA GCCGATCTTC GCCTCGGTCA ACGTGTCGTC CCGGCAGCTG
CTACGCCACG ATCTGCTGCA CGATATCCGC ACCGTGACGT CGCGCTCGTC GGTGGCGCGC
GGAACGCTGA AGCTCGAGCT CACCGAATCG CTGGTGATGG AGAATCCGGA GCACGCGGCG
CAGATGCTGC AGCGGATCCG CGAACTCGGC GTCGGCCTGG CGCTCGACGA TTTCGGCACC
GGCCACTCGT CGCTGAGCTA CCTGCAGCGC TTCCCGTTCG ACACCATCAA GATCGACCAG
TCGTTCGTCC GCACGACCAG CCGCGGCACC CGCCCGGTGA TCCTGAAGTC GATCATCGCG
CTGGCGCACG ACCTCGGCAT GGACGTGGTG GCGGAAGGCG CCGAGACGGA TTCGGATGCG
GTGGAGCTGT ATCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAACCGATG
GACGTCGATG CGGCGATGAA GCTGCTGACC GAAGAACAGC GCCTGGAAGC CGCGAGCTGA
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| Protein sequence | MRLIRCLALL ALGVMLVAAA PQAHALDAVS VRSDAPAIDL TGVLEHLHSD NDRVQISTAP
GNDGIVRRVE VRAREGGQNW VVFALANNSD DQLDRLIVAP HYRMVGSGLL WPDLGMSRIA
TITPSTGDRP ERQDSATADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF
TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WGKVLDMSSG
AERVWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVA LALFDPAVAS
GIARISLVAI AFAGFALIVY LSTHGFDRAV LLIPTWFLLV VWVVASGMAV AGTVTNDIVG
PALLGGLVLI VMLIGFTVMQ HAFSGGGATG GVISDVERRA LALIGSGDLI WDWDVSADKV
FTSPETEALL GLKRGALEGS AASWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQDFRLRTP
DGHFMWFSLK ARPVVGTDGE VTRVVGTLTD VTEIKNAEER MLHDSVHDNL TGLPNRKLFI
DRLGAVSNFA KTMPTLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LSRILKPQDT
LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ
LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RKEITILYQP
IVRLEDRSIA GFEALARWDH PKLGRMSPSE FISIAEEIGL IVELGTFVLD QTAKQLSIWQ
RAMRAREPIF ASVNVSSRQL LRHDLLHDIR TVTSRSSVAR GTLKLELTES LVMENPEHAA
QMLQRIRELG VGLALDDFGT GHSSLSYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA
LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DVDAAMKLLT EEQRLEAAS
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