| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0921 |
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| Symbol | |
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| ID | 6408575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 976576 |
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| End bp | 980085 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710835 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001989954 |
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| Protein GI | 192289349 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.306622 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCACG ACTGGGGCGT GATCGCAGCC GCTCTCGCCT ACATCGGGTT TCTGTTCGTC
GTCGCGAGCT GGGGCGATCG GCTCTCGCAA GGCCAGCGCG AGCGCGCCGG CGGATTGATC
TACCCGCTGT CACTGGCGAT CTACTGCACG TCCTGGACGT TCTTCGGTTC GGTCGGTTTT
GCCAGCCGCT CCAGTTTCGA CTTCCTTGCG ATCTATGTCG GCCCAGTCCT GGTCGTGCTG
GTCGCCACCC CGCTGCTGCG CCGCGTCATC CGGCTGGCCA AGTCGCAAAA CATCACCTCG
ATCGCCGACT TCATCGCCGC CCGCTACGGC AAGAGCCAGA AGGTCGCCGC CACCGTGGCG
ATCATCGCCA TCATCGGCTC AGTCCCCTAC ATCGCACTGC AGCTGAAGGC GGTGTCGTCG
TCGCTGCAGA CCATCCTCGG CGACGACCAC AACATCGCCG ACATCCCGAT TGTCGGCGAT
ATCGCGCTGA TCGTCGCAAT GGCGATGGCG CTGTTCACCG TCCTGTTCGG CACCCGTCAG
GCCAGCGCGA CCGAGCATCA GCACGGGCTG ATGCTGGCAG TTGCCACCGA GTCGATCGTG
AAGCTGGTGG CATTCCTGGC CGCCGGCATC TTCGTCACCT TCTGGATGTT CAGCCCGTCG
GCGCTGATCG AACGGGCGAT GCAGATGCCC GAAGCGGTCC GCGCGCTGGA TTCCACCTCG
CCGGCCAACT TCCTGACCAT GACTGCGCTG TCGTTCTGCG CCTTCATGAT GCTGCCGCGG
CAATTCCACG TCAGCGTGGT GGAGAACTCG AACGAGGCCG AGGTCGGCCG CGCCCGCTGG
CTGTTTCCGC TCTATCTGGT GGCGATCAAC CTGTTCGTCA TCCCGATCGC GCTCGCCGGC
CTTGTCAAAT TCCCATTCGG CAAGGTCGAC AGCGACATGT ACGTGCTGGC GCTGCCGATC
GATGCCGACG CCCCGATGCT GAGCGTCGCC GTGTTCATCG GGGGCCTGTC GGCCGCCACC
GCGATGGTGA TCGTCGAATG CGTCGCGCTG GCCGTAATGG TGTCGAACGA TCTGGTGATG
CCGCTGGTGC TGAAGCGGCA CGGTGCGCCC CGTCCCGATG AACAGCGGAA TTTCGGCAGG
TTCCTGCTGA CGGTCCGGCG GGTCGCGATC TTCGCGATCC TGATCCTCGC CTATCTGTAC
TACCGGGCAC TCGGCAACAC CCAGCTCGCG GCGATCGGCC TGTTATCGTT TGCGGCCATC
GCGCAGTTCG CGCCGTCTTT CTTCGGCGGC CTGATTTGGC GCCGCGCCAC TGCGCGCGGC
GCCATCGGCG GTCTGCTGGT CGGGTTTGCG GTGTGGGCCT ACACGCTGTT CATCCCGAGC
TTCATGGAGA ACAGCACCAC TGGGCTACTG CTGTTGCAGC ACGGCCCGTG GGGCATCGAG
GCGCTGCGTC CGCAGGCGCT GTTCGGCTCC GATCTGCCGC CGCTGCTCCA CGGCGTGCTA
TGGAGCCTCT CGCTCAATCT CATCGCCTAC ATCCTGCTGT CGCTGTTGCG GCAGCCGTCC
TCGATCGAGC GGCTGCAGGC TGAAGTGTTC GTGCCAGACG CCCTAACGCC AATGACGCCG
GCGTTCCGGC GCTGGCGCAC CACCGTGACG GTGCAGGACA TCGTCGGCGC GGTGTCGCAA
TATCTCGGCC CGGAGCGGGC GCGGGACTCA TTCCGTAGCT TCGCCGCCGG CCGCCGCATC
ACGCTCGACC CCGCCGCGCC GGCGGATTTC GAGCTGTTGA AACACGCCGA GCATCTGATC
GCCTCCTCGA TCGGCGCCGC CTCGTCCCGG CTGGTCCTGT CTCTGTTGCT GCGCAAGCGC
ACGGTGTCGG CCGAAGCTGC GCTGAAGCTG CTCGATGACT CCCACGCCGC GCTGCATTTC
AACCGCGAGA TCCTGCAGAC CGCGCTGAAC CACGTCCGCC AGGGCATCGC GGTGTTCAAT
CCCGAGCTGC AACTGATCTG CTCGAACCGG CAGTTCGGCG AAATCCTGGG GCTGCCGCCG
CACATCATCC AGATCGGCAT TCCGCTGATC GAGATCCTGG AATTCCTCGC CAGCAACAGC
ATCGCGCCGA TCGACGCCGA AGCGCATACC CAGATGCGGA TGGCGGCCTA TACTACAGAG
GGCGAGCCGT TCATCGAGCG CTTCCCGGAC CGCCATCTGG TGGTCGAGGT CCGCGCCAAC
CGTATGCCCG ACGGCGGCCT GGTGATCACC TTCTCCGACG TCACCCCGAG CTTCGAAGCC
GCCGAAGCGC TGGAGCGCGC CAATGCCACA CTGGAACGCC GGGTGCGCGA ACGCACCGAG
GAGCTGACCC GGCTGAATTC GCAGCTCGCG CTCGCCAAGA GCACAGCCGA AGAAGCCAAC
ATTTCCAAGA CCCGCTTCCT CGCCGCCGCA AGCCACGACA TCCTGCAGCC GCTCAACGCG
GCACGGCTCT ACGCCACCAG CCTGGTCGAG CGGCAAAACG GCGGCGAAGA CTCGCGGCTG
GTCGAGAATA TCGACGAGTC GCTGCAGGCG ATCGAAGAGA TCATCGGTGC GCTGCTCGAC
ATCTCGCGGC TCGACGCCGG CGCGATGACG CCCTCGCTGT CGAATTTCGT GATCGGCGAT
CTGATGCGGT CGCTGGAGAT CGAGTTCTCG CCCACCGCAC GCGCCAAGGG CCTGGAGCTG
ACCTTCGTGC CGTGCTCGCT GCCGGTGCAG TCGGACCGGC TGATGCTGCG CCGGCTGATG
CAGAACCTGA TCTCCAACGC GATCAAATAC ACCCCGCAGG GCCGCGTTCT GGTCGGCTGC
CGCCGTCAGG GCCAATCGCT CCGCATCGGC ATCTACGACA CCGGCGTCGG CGTGCCGATC
CTCAAGCGGG GCGAGATCTT CAAGGAGTTT CACCGGCTCG AACAGGGCGC GCGGATTGCC
CGCGGGCTAG GGCTCGGGCT GTCGATCGTG GAGCGGCTGG CGCGGGTGCT CAATCACGGC
ATCGCGCTGG ATTCCAACCG CGGCGGCGGC TCGTGCTTCT CGGTGACGGT GCCGGTCGCC
GAAGCCGTCA ACCACACCGC GGCGGTGACC AGCGCGACGC CGCTGTCGCG CGCCTCGATG
AGCGGCATCC TGGTGGTCTG CATCGAGAAC GACCCGGCGA TCCTCGACGG CATGAAGACG
CTGCTGACCA CCTGGGACGC CAAGGTGATC GCGGTGGCCG ATCCGGAGGC CGCGATCCGC
GCGATCGAGA GCAGCGAGCA GCGCGTCACC GGCCTTCTGG TCGACTATCA CCTCGATCGT
GGCAACGGCA TCGCGGCGAT TCGTGAAATC CGCCAGCGCT TCGGCCAGAG CATCCCGGCG
ATCCTGATCA CGGCCGACCG CAGTCCGGGC GTTCGCGCCT CGGCGCGGCA GGAGGAGATC
GCGGTGCTGA ACAAACCAGT GAAAGCCGCC TCGCTGCGGG CCCTGCTGAG CCAGTGGCAC
GCCCAGCAGT CGGTCGTGGC GGCGGAGTAA
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| Protein sequence | MLHDWGVIAA ALAYIGFLFV VASWGDRLSQ GQRERAGGLI YPLSLAIYCT SWTFFGSVGF
ASRSSFDFLA IYVGPVLVVL VATPLLRRVI RLAKSQNITS IADFIAARYG KSQKVAATVA
IIAIIGSVPY IALQLKAVSS SLQTILGDDH NIADIPIVGD IALIVAMAMA LFTVLFGTRQ
ASATEHQHGL MLAVATESIV KLVAFLAAGI FVTFWMFSPS ALIERAMQMP EAVRALDSTS
PANFLTMTAL SFCAFMMLPR QFHVSVVENS NEAEVGRARW LFPLYLVAIN LFVIPIALAG
LVKFPFGKVD SDMYVLALPI DADAPMLSVA VFIGGLSAAT AMVIVECVAL AVMVSNDLVM
PLVLKRHGAP RPDEQRNFGR FLLTVRRVAI FAILILAYLY YRALGNTQLA AIGLLSFAAI
AQFAPSFFGG LIWRRATARG AIGGLLVGFA VWAYTLFIPS FMENSTTGLL LLQHGPWGIE
ALRPQALFGS DLPPLLHGVL WSLSLNLIAY ILLSLLRQPS SIERLQAEVF VPDALTPMTP
AFRRWRTTVT VQDIVGAVSQ YLGPERARDS FRSFAAGRRI TLDPAAPADF ELLKHAEHLI
ASSIGAASSR LVLSLLLRKR TVSAEAALKL LDDSHAALHF NREILQTALN HVRQGIAVFN
PELQLICSNR QFGEILGLPP HIIQIGIPLI EILEFLASNS IAPIDAEAHT QMRMAAYTTE
GEPFIERFPD RHLVVEVRAN RMPDGGLVIT FSDVTPSFEA AEALERANAT LERRVRERTE
ELTRLNSQLA LAKSTAEEAN ISKTRFLAAA SHDILQPLNA ARLYATSLVE RQNGGEDSRL
VENIDESLQA IEEIIGALLD ISRLDAGAMT PSLSNFVIGD LMRSLEIEFS PTARAKGLEL
TFVPCSLPVQ SDRLMLRRLM QNLISNAIKY TPQGRVLVGC RRQGQSLRIG IYDTGVGVPI
LKRGEIFKEF HRLEQGARIA RGLGLGLSIV ERLARVLNHG IALDSNRGGG SCFSVTVPVA
EAVNHTAAVT SATPLSRASM SGILVVCIEN DPAILDGMKT LLTTWDAKVI AVADPEAAIR
AIESSEQRVT GLLVDYHLDR GNGIAAIREI RQRFGQSIPA ILITADRSPG VRASARQEEI
AVLNKPVKAA SLRALLSQWH AQQSVVAAE
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