Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0875 |
Symbol | |
ID | 6408529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 929226 |
End bp | 931952 |
Gene Length | 2727 bp |
Protein Length | 908 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642710789 |
Product | DEAD/H associated domain protein |
Protein accession | YP_001989908 |
Protein GI | 192289303 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.888716 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCCTCG CCGATTCCTC TCTTGATCTG CTGCCCGACC GGTTCCGCCG CTGGTTCGCC GAGCGCGGCT GGGCGCCGCG CGATCATCAG CTCGCGCTGC TGGAAAAGGC ACGGGTGCAA CGCTCCGCGC TGCTGATCGC GCCGACCGGC GCCGGCAAGA CCCTGGCTGG TTTCCTCCCA TCGCTGGTGG AACTGAGCGG GGCGGCACCT AACCTCTCCC CGTTCGCGGG GAGAGGTCGA CTTGCTGGCG TAGCCGGCGA GTCGGGGGAG GGGGGGGATG AATCTCCACC TGCGGAAGTG GCGCTCACGA CCGCGACGCC TCCTCATCCG GCGCAGCAAG CTGCGCTTGC CGCGCCACCT TCTCCCCGCG CGCGGGGAGA CGGAATGGTC TCGCGGAGCG GCGGGCTGCA TACGCTCTAC ATCTCGCCAC TCAAGGCGCT CGCAGTCGAC ATCGCGCGTA ATCTCGAAAC GCCGATCGCG GAGATGAAGC TGCCGATCCG CGTCGAAACC CGCACCGGCG ATACGCCGGT GTCGCGGCGG ACACGGCAGC GCAAATATCC GCCCGACATC CTGCTGACAA CGCCGGAGCA GCTCGCGCTG CTGCTCGCCT CCGACGATGC GCCCTATCTG TTCGGCACCC TGCGGCGGAT CGTGCTGGAC GAACTGCACG CGCTGGTGAC GTCGAAGCGC GGCGATCTGC TATCGCTCGG GCTCGCCCGG CTGTGGCGGA TCGCGCCACA GCTCCGCGCC ATCGGTCTGT CGGCGACGGT CGCCGATCCC GACGAACTCG CCCGCTTTCT GGTGCCGCAG CCCTTTGTCC CCTCTCCCGC AAGGGGAGAG GGAGACGAGA GGGCCGTTGA TCAAGCCGAC ATCGTCGTCG CCACCGGCGC CGCGCCGCCG ATTGTCGAGA TGCTCGACAC CAAGGAACGG CTGCCGTGGG CCGGGCACTC TGCGCGCCAC GCGCTGCCGG AGATCTACGA TCTGATCCGG CGCAACACCA CGACGCTGGT GTTCGTCAAC ACCCGCAGCC AGGCCGAGAT GCTGTTCCAG GAGCTTTGGC GCATCAACGA CGACAACCTC GCGATCGCGC TGCATCACGG CTCGCTCGAT GTCGGTCAGC GCCGCAAGGT CGAGGACGCG ATGGCGGCGG GACGGCTGCG CGGCGTGGTG TGTACGTCGT CGCTCGATCT CGGCGTCGAC TGGGGCGACG TCGATCTGGT CGTCAATGTC GGCGCACCTA AAGGCTCGTC GCGGCTGATG CAGCGCATCG GCCGTGCTAA CCACCGCATC GACGAAGCCT CGCGCGCCGT GCTGGTGCCG TCCAATCGCT TCGAAGTGCT GGAATGCGTC GCCGCAATCG ATGCTGTCGC CGAGAACGCG CAGGACACGC CGCCGCAGCG CAAGGGCGCG CTCGACGTGC TGGCGCAGCA CATTCTCGGC TGCGCCTGCG GCGAACCGTT TGTCGCCGAT GATCTGTACG CGGAAATTCG CAGCGCTGCG CCCTATGCGG ATCTGTCGCG CGGTGATTTC GACGACACGC TCGATTTCGT CGCCAGCGGC GGCTACGCGC TGAAGAGCTA CGAGCGCTTC GCCCGCATCA AGCAGGACAA GCAGGGCAAA TGGCGCGTCG CCAATCCGAA GGTGCGGCAG GCCTATCGCC TGAATGTCGG CACCATCGTC GAAGAGGCGA TGCTGAAGGT GAAGCTCGTG CGCTCGTCGC GCGCCAAGGG CGGCGGCAGC ACCGGCGCGA TCGCGCGCGG CGGGCGGATG CTCGGCCAGA TCGAAGAGGG CTTCATCGAA GGCCTGACAG CCGGCGACAC CTTTGTGTTC GGCGGCGAGG TGGTGCGCTA CGAGGCGCTG ATGGAGGATC AGGTCTACGT CTCGCGCGCC CACGACAAGG ACGCGCGGGT GCCGTCCTAC ATGGGTGGCA AGTTTCCGCT CTCGACCTAC CTCGCCGAGC GCGTCCGCGG CCTGCTCGCC GATAAGCGCA GCTGGACTGG CCTGCCGGAT CAGGTGCGCG ATTGGTTGGC GCTCCAGACC GAGGCCTCGC AGGTGCCGGG CCGGCGCGAG CTGGTGATCG AGACGTTCCC GCGTGCCGCC AAGTACTATC TCGTCTGCTA TCCGTTCGAG GGGCGGCTGG CGCATCAGAC GCTCGGCATG CTGCTGACGC GGCGGCTGGA ACGCGCCCGC GCCCGGCCGC TCGGTTTCGT CGCGAATGAA TACGCCCTCG CGGTGTGGGG GCTCAGCGAC ATGTCGCAGA TGATCCGGCA GGGCCGGCTC GATCTCGATG CGCTGTTCGA TCCGGACATG CTGGGCGACG ATCTCGAAGC CTGGCTCGCG GAATCGGCGC TGATGAAGCG CACCTTCCGC AACTGCGCGA TCATCTCCGG CCTGATCGCA CGGCGCTTCG CCGGCGAAGA GAAGTCGCGC CGCCAGGTGC TGTTCTCGAC CGACCTCGTC TACGACGTGC TCAACAAGCA TCAGCCCGAC CATGTGCTGC TGCGCGCCGC CCGTGCCGAC GCCGCCACCG GGCTGCTCGA TCTGCGGCGA CTGAGTGATA TGCTGATGCG AATCAACGGG CGCATCGTCC ACAAGGAACT CGACCGGGTG TCGCCGCTCG CGGTGCCGGT GATGCTGGAA ATCGGCCGGG AAGCCGTGTA CGGCGAGGCC TCCGATGTCC TGCTCGCCGA AGCCGCCGAT GAACTGGTGC GCGAGGCAAT GAGCTGA
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Protein sequence | MSLADSSLDL LPDRFRRWFA ERGWAPRDHQ LALLEKARVQ RSALLIAPTG AGKTLAGFLP SLVELSGAAP NLSPFAGRGR LAGVAGESGE GGDESPPAEV ALTTATPPHP AQQAALAAPP SPRARGDGMV SRSGGLHTLY ISPLKALAVD IARNLETPIA EMKLPIRVET RTGDTPVSRR TRQRKYPPDI LLTTPEQLAL LLASDDAPYL FGTLRRIVLD ELHALVTSKR GDLLSLGLAR LWRIAPQLRA IGLSATVADP DELARFLVPQ PFVPSPARGE GDERAVDQAD IVVATGAAPP IVEMLDTKER LPWAGHSARH ALPEIYDLIR RNTTTLVFVN TRSQAEMLFQ ELWRINDDNL AIALHHGSLD VGQRRKVEDA MAAGRLRGVV CTSSLDLGVD WGDVDLVVNV GAPKGSSRLM QRIGRANHRI DEASRAVLVP SNRFEVLECV AAIDAVAENA QDTPPQRKGA LDVLAQHILG CACGEPFVAD DLYAEIRSAA PYADLSRGDF DDTLDFVASG GYALKSYERF ARIKQDKQGK WRVANPKVRQ AYRLNVGTIV EEAMLKVKLV RSSRAKGGGS TGAIARGGRM LGQIEEGFIE GLTAGDTFVF GGEVVRYEAL MEDQVYVSRA HDKDARVPSY MGGKFPLSTY LAERVRGLLA DKRSWTGLPD QVRDWLALQT EASQVPGRRE LVIETFPRAA KYYLVCYPFE GRLAHQTLGM LLTRRLERAR ARPLGFVANE YALAVWGLSD MSQMIRQGRL DLDALFDPDM LGDDLEAWLA ESALMKRTFR NCAIISGLIA RRFAGEEKSR RQVLFSTDLV YDVLNKHQPD HVLLRAARAD AATGLLDLRR LSDMLMRING RIVHKELDRV SPLAVPVMLE IGREAVYGEA SDVLLAEAAD ELVREAMS
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