| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0868 |
|---|
| Symbol | |
|---|
| ID | 6408522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 920365 |
|---|
| End bp | 921687 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710782 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001989901 |
|---|
| Protein GI | 192289296 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0983692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAATCCG CCCATTCGTC CGTAACCACC CGGCAGGTGT TCGCCATCGC CGGCCCGGCG
ATGGTCGCGA ATCTGACGAC GCCACTGCTC GGCGTCGTCG CCACTACGGC GATCGGACGG
CTCGGCGAGG CGACGCTGCT CGGCGGCGTG TCGATGGCCT CGGTGCTGTT CGACTGCCTG
TTCTGGCTGT TCGGCTTCCT GCGGATGAGC ACGCTGGCGT TCACCGCGCA GGCGCTCGGC
GCCGGACAGA GCCGTGAAGT CCCCGCGCAC CTGCTGCGCG GACTGATCGT CGCGGCTGGC
ATCGGCCTGT TGCTGATCGC GCTGCAAGGT CCGCTCGCCG CGGTGCTGAT CGGCGCGATG
GGCGGCAGCG AGGCGGTGAG CACCGCCGCC AAGACCTACT TCTCGATCCG GATCTGGTCG
TCGCCGCTGG TGCTGGCGAA CTTTGCGGTG CTCGGCTGGC TGGTCGGCCA GGCGCGCGCC
ACACTTGCAC TGGCCGTGCA GATCGCCATC AACCTGATCA ACATCGCCGC CACCGTGCTG
CTGGTGCTGT GGTTCGACTT CGGCGTCGCC GGCGCCGCGA TCGCGGCGGT CATCGCCGAA
GGCTCGGGGC TGGTGATCGG GCTCGCGATC GCAGCTTGGC GCGGCCATGG GCTGTTCAAG
GTGTCGCGCG CGATGCTGTT CGATCCGCAC CGGTTGCGGC GGATGTTCGC GATCAACCGC
GACATCATGA TCCGGACCGC GGCGCTGATC GCCGTATTTC TATTCTTCAC CGCGCAGGGC
GCGCGCGGCG GCGACGTGGT GCTCGCCACC AACGCGGTGC TCAACAATTT CCTGATGATC
AGCGCGTTCT TCCTCGACGG CCTCGCCAAC GCCGCCGAGC AACTCTGCGG CCGCACCCTC
GGGGCTCGCG ACCGTGCCGG CTTCGTCAAG GCCACGCGGC TGGTGATCCT GTGGGGCTTC
GGCTTCGCGC TCATCGTCAG CGCGATCTAC GCATTCGCCG GGCCGGCGTT GATCGACTTC
ATCACCTCGA ACGAAGAGCT TCGCCGCACC GCGCGCGATT ATCTCTGGCT GGTGACGCTG
GCGCCGATGC TCGGCGTGTT CGCGTTCGCC TATGACGGCG TGTTCATCGG CGCCACCTGG
GCTCGCGAGA TGCGCAACCT GATGCTGCTG TCGCTGGTGC TGTTCCTGCT GTCGTGGTTC
GCGCTCCGCC CGCTCGGCAA CACCGGACTA TGGATCGCGC TATTATCTCA CTACGTCTGG
CGCGGCGGCC TGCAGGCGCT ACGCTATCCA GCGATGGTGC GGACGTCGTT TTCGGCAAAC
TGA
|
|---|
| Protein sequence | MESAHSSVTT RQVFAIAGPA MVANLTTPLL GVVATTAIGR LGEATLLGGV SMASVLFDCL
FWLFGFLRMS TLAFTAQALG AGQSREVPAH LLRGLIVAAG IGLLLIALQG PLAAVLIGAM
GGSEAVSTAA KTYFSIRIWS SPLVLANFAV LGWLVGQARA TLALAVQIAI NLINIAATVL
LVLWFDFGVA GAAIAAVIAE GSGLVIGLAI AAWRGHGLFK VSRAMLFDPH RLRRMFAINR
DIMIRTAALI AVFLFFTAQG ARGGDVVLAT NAVLNNFLMI SAFFLDGLAN AAEQLCGRTL
GARDRAGFVK ATRLVILWGF GFALIVSAIY AFAGPALIDF ITSNEELRRT ARDYLWLVTL
APMLGVFAFA YDGVFIGATW AREMRNLMLL SLVLFLLSWF ALRPLGNTGL WIALLSHYVW
RGGLQALRYP AMVRTSFSAN
|
|---|
| |