Gene Rpal_0805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0805 
Symbol 
ID6408458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp843769 
End bp846615 
Gene Length2847 bp 
Protein Length948 aa 
Translation table11 
GC content65% 
IMG OID642710718 
Productformate dehydrogenase, alpha subunit 
Protein accessionYP_001989838 
Protein GI192289233 
COG category[R] General function prediction only 
COG ID[COG3383] Uncharacterized anaerobic dehydrogenase 
TIGRFAM ID[TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.624345 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCTGG TCCACGAAAC CGATTTCGGC ACGCCGCCCT CGCTCTCCGA AAACATGGTG 
ACGCTGACGA TTGACGGTCG CAGCGTCAGC GTACCCGAGG GCACCTCGAT TATGCGCGCC
GCGATGGAGA TCGGCACGGC GATCCCGAAA CTCTGTGCCA CCGACATGGT CGATGCGTTC
GGCTCATGTC GGCTGTGCCT TGTCGAGATC GATGGCCGCA GCGGCACCCC GGCCTCGTGC
ACCACGCCGG TCGCCGACGG TCTCGTCGTC CACACCCAGA CCGAGCGGTT GAAGCAGATC
CGCAAAGGCG TGATGGAGCT GTACATCTCC GATCACCCGC TCGACTGCCT AACCTGCTCG
GCCAATGGCG ATTGCGAGCT GCAGGACATG GCCGGCGCGG TCGGCCTGCG CGACGTGCGC
TATGGATACT CCGGCGAGAA GCATCCCAAT CCAGGGCTCG ACGAGTCGAA TCCGTACTTC
ACTTACGACG CGTCGAAGTG CATCGTGTGC TCGCGCTGCG TCCGCGCCTG CGAGGAAGTG
CAAGGCACCT TCGCGCTCAC CATCGCAGGC CGCGGCTTCG ACTCTGTCGT GTCGCCCGGC
ATGCAGGAGA GTTTCCTCGG TTCGGAATGC GTGTCCTGCG GCGCCTGCGT GCAGGCCTGT
CCGACCGCGA CGCTGAACGA GAAGAGCGTG ATCGAGATCG GCACGCCGGA GCGCTCGGTC
GTGACCACCT GCGCCTATTG CGGCGTCGGC TGCACCTTCA AGGCCGAGAT GCGCGGCGAA
GAGCTGGTGC GCATGGTGCC TTACAAGGAC GGCAAGGCCA ATCGCGGCCA TTCCTGCGTC
AAGGGCCGCT TCGCCTGGGG CTACGCCAAT CACAAGGAGC GCATTCTCAA GCCGATGATC
CGCGGCAAGA TCACCGAGCC GTGGCGCGAG GTGAGCTGGG ACGAGGCGTT CGCCTATGCG
GCGTCCGAAC TGAAGCGGAT CCAGGCCAAA TACGGCCGCG ATTCGATCGG CGGTATCACC
TCGTCGCGCT GTACCAATGA AGAAACCTTC CTGGTGCAGA AGTTGATCCG CGCCGGCTTC
GGCAACAACA ATGTCGATAC CTGCGCCCGC GTCTGCCACT CGCCGACTGG TTACGGTCTG
TCGACCGCGT TCGGCACCTC GGCCGGCACC CAGAATTTCG ACTCGGTCGA GCATGCCGAC
GTGGTGATGA TCATCGGCGC CAACCCGACC GACGGCCACC CGGTGTTCGG TTCGCGCCTG
AAGAAGCGGC TGCGCCAGGG CGCCAAGCTG ATCGTGGTCG ACCCGCGCCG GATCGATCTG
GTGCGCTCGG CCCATATCGA GGCCGCGCAG CATCTGCCGC TGAAGCCCGG CACCAACGTC
GCGGTGTTGA CCGCGCTGGC CCACGTCATC GTCACCGAAG GACTCGCCAA CGAAGCCTTC
GTCCGCGAGC GCTGCGACTG GAGCGAATAC GAGCACTGGG CGGCGTTCGT CTCGGGCGAG
CGGCACAGCC CGGAAGCCAC CGCGGCCTTC ACCGGCGTCG ATCCGCAAGC GCTGCGCGAA
GCCGCGCGGC TCTACGCCAC CGGCGGCAAC GGCGCGATTT ATTACGGCCT CGGCGTCACC
GAGCACAGCC AGGGTTCGAC CACCGTGATG GCGATCGCCA ACCTCGCGAT GGCCACCGGC
AATCTCGGCC GCCCCGGCGT CGGCGTAAAC CCGCTGCGCG GCCAGAACAA CGTGCAGGGC
TCGTGCGACA TGGGCTCGTT CCCGCACGAA CTGCCGGGCT ATCGCCACAT CTCGACCGAC
TCGGTGCGCG AGAGCTTCGA GGCGCTATGG AACGTCAAAC TCGACAACGA GCCGGGCCTA
CGTATTCCCA ACATGCTCGA CGCCGCGGTC GAAGGCTCGT TCAAGGCGCT GTACGTGCAG
GGCGAGGATA TCCTGCAGTC CGACCCCAAC ACCAAGCACG TCGCCGCCGG TCTCGAAGCG
ATGGAGTGCG TCATCGTCCA TGACCTGTTC CTCAACGAGA CCGCCAATTA CGCCCATATC
TTGCTGCCGG GTTCGACCTT CCTTGAGAAG AACGGCACCT TCACAAATGC CGAGCGCCGC
ATCCAACGTG TCCGCAAGGT GATGTCGCCG AAGAATGGTC TGGAAGACTG GGAAGTCACG
CTGCGGCTTG CCGAGGCGGT CGGTTACAGG ATGAACTACA CGCATCCGTC GCAGATCATG
GACGAGATTG CGGCGCTGAC GCCGACTTTC GCGGGCGTGT CCTACGACAG GCTGGAAGAA
CTCGGCTCGA TCCAGTGGCC GTGCAACGAC AAGGCGCCGG AAGGCACGCC GGTGATGCAC
ATCGATCATT TCGTCCGCGG CAAGGGCAAG TTCGTCATCA CCGAATATGT CGCCACCGAC
GAGCGCACCG GGCCACGCTT CCCGCTGCTT CTGACGACCG GGCGCATCCT GTCGCAATAC
AATGTCGGGG CGCAGACGCG GCGCACCGCC AATACGGTGT GGCACGACGA GGATCGGCTC
GAGATCCATC CGCACGACGC CGAGCAGCGC GGCGTGCGGG ACGGCGACTG GGTGCGACTC
GCCAGCCGCG CCGGCGAGAC CACGCTGCGC GCGCTGATCA CCGACCGCGT CGCGCCGGGC
GTCGTTTATA CGACGTTCCA TCACCCCGAC ACCCAGGCCA ACGTCGTCAC GACCGAGTAC
TCGGACTGGG CCACGAACTG CCCGGAATAC AAGGTGACAG CCGTGCAGGT CGCTCCGTCG
AACGGCCCCT CGGAGTGGCA GCGCTCCTAC GAGCAGCAGG CGGCGGCCGC GCGGCGGATT
GCTGTGCCGG CGGAGGCCGC GGAGTGA
 
Protein sequence
MALVHETDFG TPPSLSENMV TLTIDGRSVS VPEGTSIMRA AMEIGTAIPK LCATDMVDAF 
GSCRLCLVEI DGRSGTPASC TTPVADGLVV HTQTERLKQI RKGVMELYIS DHPLDCLTCS
ANGDCELQDM AGAVGLRDVR YGYSGEKHPN PGLDESNPYF TYDASKCIVC SRCVRACEEV
QGTFALTIAG RGFDSVVSPG MQESFLGSEC VSCGACVQAC PTATLNEKSV IEIGTPERSV
VTTCAYCGVG CTFKAEMRGE ELVRMVPYKD GKANRGHSCV KGRFAWGYAN HKERILKPMI
RGKITEPWRE VSWDEAFAYA ASELKRIQAK YGRDSIGGIT SSRCTNEETF LVQKLIRAGF
GNNNVDTCAR VCHSPTGYGL STAFGTSAGT QNFDSVEHAD VVMIIGANPT DGHPVFGSRL
KKRLRQGAKL IVVDPRRIDL VRSAHIEAAQ HLPLKPGTNV AVLTALAHVI VTEGLANEAF
VRERCDWSEY EHWAAFVSGE RHSPEATAAF TGVDPQALRE AARLYATGGN GAIYYGLGVT
EHSQGSTTVM AIANLAMATG NLGRPGVGVN PLRGQNNVQG SCDMGSFPHE LPGYRHISTD
SVRESFEALW NVKLDNEPGL RIPNMLDAAV EGSFKALYVQ GEDILQSDPN TKHVAAGLEA
MECVIVHDLF LNETANYAHI LLPGSTFLEK NGTFTNAERR IQRVRKVMSP KNGLEDWEVT
LRLAEAVGYR MNYTHPSQIM DEIAALTPTF AGVSYDRLEE LGSIQWPCND KAPEGTPVMH
IDHFVRGKGK FVITEYVATD ERTGPRFPLL LTTGRILSQY NVGAQTRRTA NTVWHDEDRL
EIHPHDAEQR GVRDGDWVRL ASRAGETTLR ALITDRVAPG VVYTTFHHPD TQANVVTTEY
SDWATNCPEY KVTAVQVAPS NGPSEWQRSY EQQAAAARRI AVPAEAAE