Gene Rpal_0625 details

Gene Information

• Locus tag: Rpal_0625
• Symbol: def
• ID: 6408276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 679449
• End bp: 679976
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 642710538
• Product: peptide deformylase
• Protein accession: YP_001989660
• Protein GI: 192289055
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.276668
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCTAC GCGAAATCAT CATCCTGCCC GATAAGCGGC TGCGCGAGAT CTCCAAGCCC 
GTCACCGAGG TGACGACCGA GATCCGCAAA CTCGCCGACG ACATGTTCGA GAGCATGTAC 
GAGGCCCCCG GGATCGGACT GGCGGCGATC CAGATCGCCG AGCCCGTGCG GCTGATCACG 
ATGGACATCG TTCGCAAGGA GGGCGACGGC AAGAGCGATC CGCGCGCCTT TATCAATCCT 
GAGATCGTCG GCGCGTCCTC GGAGATGAAC GTTTACGAGG AAGGCTGCCT GTCGATCCCG 
GAATACTATG CCGAGGTCGA GCGCCCGAAG ACGGTGCGGA TCCGCTACAC CGACCTCGAC 
GGCAACGTGA AGGAAGAGGA CGCCGACGGC CTGTTCGCGA CCTGCATCCA GCACGAGATC 
GATCATCTCA ACGGCGTGCT GTTCGTCGAT CACCTGTCGA AGCTGAAACG CGCGATGGTG 
ATCCGCAAGT TCGAGAAGGC TGCCAAGCGC GGCATCAAAT ACGTCTGA 

 

Protein sequence

MALREIIILP DKRLREISKP VTEVTTEIRK LADDMFESMY EAPGIGLAAI QIAEPVRLIT 
MDIVRKEGDG KSDPRAFINP EIVGASSEMN VYEEGCLSIP EYYAEVERPK TVRIRYTDLD 
GNVKEEDADG LFATCIQHEI DHLNGVLFVD HLSKLKRAMV IRKFEKAAKR GIKYV