| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0609 |
|---|
| Symbol | |
|---|
| ID | 6408259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 662690 |
|---|
| End bp | 664957 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710522 |
|---|
| Product | PTSINtr with GAF domain, PtsP |
|---|
| Protein accession | YP_001989644 |
|---|
| Protein GI | 192289039 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3605] Signal transduction protein containing GAF and PtsI domains |
|---|
| TIGRFAM ID | [TIGR01417] phosphoenolpyruvate-protein phosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.125337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGAGCA CGTCGGGTGG CCCCCGCGTC TTGCTGAGAC GGCTCCGCGA AACCATGGCG
GAGCAAGTCT CCGCGCAGGA ACGCCTCGAC AAGATCGTGG TGTTGATCGC GGCCAACATG
GTCGCCGAAG TGTGCTCGGT CTATGTGCTG CGGATCGACA ACACCCTCGA GCTGTACGCC
ACCGAAGGTC TGAACCGCGA GGCGGTGCAC CAGACCGTGC TGAACGCCCA CGAAGGTCTG
GTCGGTCTGG TCGCCTCGGA AGCGACGCCG CTGAACCTGT CGGATGCGCA AAGCCATCCG
GCGTTCTCGT TCCGCCCGGA GACCGGCGAA GAAATCTACC ACTCGTTCCT CGGCGTGCCG
ATCCTGCGCG CCGGCAATAC CCTCGGCGTG CTGGTGGTGC AGAACCGCGC CAAGCGCACC
TATGTCGAGG AAGAGGTCGA GGCGCTGCAG ACCACCGCGA TGGTGCTGGC CGAGATGATC
GCCTCGGGCG AGCTGTCGGC GCTGGCTCAG CCCGGTGCCG AACCGGCGGC GCGGCACTCG
ATCCACAAAA CCGGTGCGGT GCTGTCCGAC GGCATCGCGC TTGGTCACGT CGTGCTGCAC
GAGCCGCGCG TCGTCATCAC CAATTACATC GCCGAAGACC TGCCGAAGGA AATCAAGCGG
CTCGACGCGG CGCTCGCCAA GCTGCGCTCC GATCTCGACC GGATGCTGGA GCGGGGCGAC
TTCGCCGAGG GCGGTGAGCA TCGCGACGTG CTCGAAGCCT ACCGGATGTT CGCCAATGAT
CACGGCTGGT CGCACAAGCT GCACGAAGCG GTCGCCACCG GTCTCACCGC CGAGGCCGCG
GTCGAACGCG TGCAGTCGGA CACCAGAGCG CGGATGCTAC GCTCGACCGA TCCTTACTTG
CGCGACCGGC TGCACGATCT CGAAGATCTC GGCCACCGCC TGATGCGCCA GCTCGTCGGG
CAGGACCATG CGCCGTCGCG CGAGCAACTG CCTGACAATG CCATCCTGAT CGCGCGCTCG
ATGGGGCCTG CGGCGCTGCT CGACTACGAC CGCAAGCGGC TGCGCGGCCT GGTGCTCGAA
GAAGGCACCG CCAATTCGCA CGTCTCGATC GTGGCGCGCG CCCTCGGCAT CGCGGCGATC
GGCGAGGTGC CGAACGCGCC AGGCATCGCC GATCCGGGCG ACGCGATCAT CGTCGATGCC
ACCTCGGGCT CGATCTATGT CCGCCCGTCT GCCGAAATCG AAGCCGCCTA TGCGGAGCGG
GTGCGCTTCC GCGCCCGGCG ACAGGCGCAG TATTCGGCGC TGCGCGATCT GCCCTGCGCC
ACCAAGGATG GCCAGCCGAT CGATCTGATG ATCAACGCGG GTCTGACCAT CGACCTGCCG
CACATCGAAG ACACCGGCTC TTCCGGCATC GGCCTGTTCC GCACCGAGCT GCAGTTCATG
GTCGGCCAGA GCCTGCCGCG CTCGTCCGAT CAGCTCGCGC TGTATCGCGC CGTGCTCGAC
GCCGCCGGCA GCAAGCCGGT GACCTTCCGC ACCCTCGACA TAGGCGGCGA CAAGGCGCTG
CCCTACATGG AGACGGTGGT CGAGGAGAAT CCGGCGCTGG GCTGGCGCGC GATCCGGCTC
GGGCTCGACC GGCCCGGCCT GCTGCGCAGC CAGATTCGAG CGCTGCTGCG TGCCGCCGCG
GGTCGTTACC TGCGGGTGAT GTTCCCGATG ATCTCTGAGG TGGCCGAGTT CGATGCCGCC
AAGAGCATCA TCGAGCGCGA ACTGACTTAT CTGCGCCAGC ATGGCCATAC CCTGCCGGAG
CGCGTCGACG TCGGCACCAT GCTGGAAGTG CCGGCGCTGT TGTATCAGCT CGACGAGCTG
TTCAAGCGCG CGGACTTCGT GTCGGTGGGC TCCAACGACC TGTTCCAGTT CCTGTTCGCA
GTCGATCGCG GCAACTCGAA AGTGTCGGAA CGGTTCGACA CGCTGTCGGC GCCGATCCTG
CGGGCGCTGC GCGACATCGT CCGCAAGGCG CGTGCGGCCA AGCGCTCACT GTCGCTGTGC
GGCGAGATGG CATCGCAGCC GCTGGCGGCA TTGGCCCTGA TCGCGATCGG CTACCGCTCG
CTGTCGGTGT CTGCACTGGC GCACGGCCCG GTGAAGGCGA TGATCCTCGG TCTCGACCTC
GCCAAGGCGG AGGCGATGAT CGGGCCGCTG CTCGACGCGC CGGCCGGCAG CGTCTCGATT
CGCGACAAGC TGATCGAATT CGCCGAAGCG CATCAGCTCG CTTTGTAG
|
|---|
| Protein sequence | MRSTSGGPRV LLRRLRETMA EQVSAQERLD KIVVLIAANM VAEVCSVYVL RIDNTLELYA
TEGLNREAVH QTVLNAHEGL VGLVASEATP LNLSDAQSHP AFSFRPETGE EIYHSFLGVP
ILRAGNTLGV LVVQNRAKRT YVEEEVEALQ TTAMVLAEMI ASGELSALAQ PGAEPAARHS
IHKTGAVLSD GIALGHVVLH EPRVVITNYI AEDLPKEIKR LDAALAKLRS DLDRMLERGD
FAEGGEHRDV LEAYRMFAND HGWSHKLHEA VATGLTAEAA VERVQSDTRA RMLRSTDPYL
RDRLHDLEDL GHRLMRQLVG QDHAPSREQL PDNAILIARS MGPAALLDYD RKRLRGLVLE
EGTANSHVSI VARALGIAAI GEVPNAPGIA DPGDAIIVDA TSGSIYVRPS AEIEAAYAER
VRFRARRQAQ YSALRDLPCA TKDGQPIDLM INAGLTIDLP HIEDTGSSGI GLFRTELQFM
VGQSLPRSSD QLALYRAVLD AAGSKPVTFR TLDIGGDKAL PYMETVVEEN PALGWRAIRL
GLDRPGLLRS QIRALLRAAA GRYLRVMFPM ISEVAEFDAA KSIIERELTY LRQHGHTLPE
RVDVGTMLEV PALLYQLDEL FKRADFVSVG SNDLFQFLFA VDRGNSKVSE RFDTLSAPIL
RALRDIVRKA RAAKRSLSLC GEMASQPLAA LALIAIGYRS LSVSALAHGP VKAMILGLDL
AKAEAMIGPL LDAPAGSVSI RDKLIEFAEA HQLAL
|
|---|
| |