Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0530 |
Symbol | |
ID | 6408179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 577475 |
End bp | 579217 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642710442 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001989565 |
Protein GI | 192288960 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCGTCCG CCGCTCCTGC GCCCCGCTCA TCGACCGCGC AGACCGTGAC CGCGCCTGAT TCGTTGTTGC TGTCGCTGCT CGGCCAAGCC GCCTTCGTCT GGGATCTCGC CTCCGATACG CTGAGCTGGA CCGGCCGGGC TGCCGAATTT TTTCAGGACA TTCCCGCCGA AACGCTGGCC ACCGGCGCAA GCTTCGCGGC GCTGCTGGAG CCATCGCGCC ACGTCCGGTC GGACGCGTTG CTGAACGGCG CCGCCGCGGC CGGACCGGGC TGCGTGCCGT ATCGGATCGA ATACGGCATC CGGGCCTCGA CTGCGGCCCC GGTAAGCTGG ATCGAGGAGA CCGGGGTCTG GTTCGCCGGT CCCGACGGCC GCCCGGCGCG GGTCGAGGGC ATCGTCCGCA TCAACAACGA GCGTCACGCC CGCGACGAGC AACTCCTCAA GCTGTCGCAG CACGATCCGC TGACCGGCGA ACTCAACCGC ACCCATCTGA TAGGTGCGCT CGCCGAAGCT ATCGAGGAAG CGTCGCGCTT CCGCACCAGC CTGTCGTTCA TGCTGGTCGG CCTCGATCAT CTGGCGCGCG TCAACGACTC GTTCGGCTTC GATGTCGCCG ACGAAGTGAT CTTGACTATT GCCGGCCGGA TCCGCAATCG GCTGCGCGCC GGCGATCAGC TCGGTCGGTT CTCCGGCAAC AAATTCGGAC TGGTGCTGAA GAACTGCACG GTCGACGACG CCCATATAGC GGCTGAACGG TTTCTCGCCG CGGTGCGTGA CGAGATCGTG CCGACCAAAT CGGGCCCGGT ATCGCTCACC GCGTCGATCG GTGCGGTAAG CGCGCCGCGC CACGCCCGCA CCGCCGATGA AGCCATCAAC CGCGCCCAAG AGGCATTGGC CGCCGCCAAG CATCGGCGCA GCGGCTCATT CGCGATGTGG CGGCCGAATG TCGAGCGCGA CACGCAGCGC CGCGTCAACA TCCGCGTCAC CGACGAGATC GTCACCGCGC TGAACGAACG CCGCATCGTG CTGGCCTACG AGCCGGTGGT CGACGCATCG TCGCGGGCGC CGGCTTTCCA CGAATGCCTG GTGCGTATGA AGACCGACGA TGGTCAGGTT CTGTTTGCGC CGGACATCGT CCCGGTGGCG GAGCGGCTCG GGCTGATCCG GCTGGTCGAT CATCGCGTGC TCGAACTGGT GGTGGCCGAA CTCGCTGCGG CGCCCGGCGT GACGCTCAGC CTCAACATCT CGCCCGACAC CACCATCGAT GCCGATTGGT GGGCCGGCAT CGAATCGCTG ATGCTGGCCC ATCCCGGCAT CGCCGAGCGG CTGATCGTCG AGATCACCGA GACGGTGGCG ATCCCTGACC TTGATGAGGT GCGCGGCTTC GTCAATCGGC TGAAGACTCT AGGTGCGAAG ATCGCGATCG ACGATTTCGG CGCCGGCTAC ACTTCATTCC GCAATCTGCG CGCGCTCGGC GTCGACATCG TCAAGATCGA CGGCGCCTTC GTGCAGAACA TCGCACGGTC GGCCGATGAC CGCGCGTTCG TGCAGACGCT GATTGATCTG GCGCGCCGGC TCGGCATCAA GACCGTGGCC GAATGGGTGC AGGACGACGA GTCCGCGCAG CTGTTGCGCG ACTGGGGTTG CGACTACATC CAGGGGCGGC TTATCGGCCT GGCGTCACAG CAGCGGCCGT GGCCGCTCGC CGCCGAAGCG GCTGCGCGCC TCGCCGGCAA AGCCGTCAAT TAG
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Protein sequence | MSSAAPAPRS STAQTVTAPD SLLLSLLGQA AFVWDLASDT LSWTGRAAEF FQDIPAETLA TGASFAALLE PSRHVRSDAL LNGAAAAGPG CVPYRIEYGI RASTAAPVSW IEETGVWFAG PDGRPARVEG IVRINNERHA RDEQLLKLSQ HDPLTGELNR THLIGALAEA IEEASRFRTS LSFMLVGLDH LARVNDSFGF DVADEVILTI AGRIRNRLRA GDQLGRFSGN KFGLVLKNCT VDDAHIAAER FLAAVRDEIV PTKSGPVSLT ASIGAVSAPR HARTADEAIN RAQEALAAAK HRRSGSFAMW RPNVERDTQR RVNIRVTDEI VTALNERRIV LAYEPVVDAS SRAPAFHECL VRMKTDDGQV LFAPDIVPVA ERLGLIRLVD HRVLELVVAE LAAAPGVTLS LNISPDTTID ADWWAGIESL MLAHPGIAER LIVEITETVA IPDLDEVRGF VNRLKTLGAK IAIDDFGAGY TSFRNLRALG VDIVKIDGAF VQNIARSADD RAFVQTLIDL ARRLGIKTVA EWVQDDESAQ LLRDWGCDYI QGRLIGLASQ QRPWPLAAEA AARLAGKAVN
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