| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0216 |
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| Symbol | sdhA |
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| ID | 6407860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 234650 |
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| End bp | 236473 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710124 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001989252 |
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| Protein GI | 192288647 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.493342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCGA ACGTCAACGG CGCCCCGGCG GCGGGCGGCT ACGCCTATCC GATCGAGGAC
CACACCTACG ACGTCGTGGT GGTCGGCGCC GGCGGCGCGG GGTTGCGCGC AGTGGTCGGC
TGCAGCGAAG CGGGCCTGCG CACCGCCTGC ATCACCAAGG TGTTCCCGAC CCGCTCGCAC
ACCGTGGCTG CCCAGGGCGG CATCTCGGCC TCGCTCGGCA ACATGCATAA GGATGACTGG
CGCTGGCACA TGTACGACAC CGTGAAGGGG TCGGACTGGC TCGGCGATCA GGACTCGATC
GAGTACATGG TCCGCAACGC GCCGGAAGCC GTGTACGAAC TCGAGCATTG GGGTGTGCCG
TTCTCGCGCA CCGAAGACGG TAAGATCTAT CAGCGGCCGT TCGGCGGCAT GACGATGGAT
TTCGGCAAGG GCCAGGCGCA GCGCACCTGC GCGGCCGCCG ACCGCACCGG CCACGCCATG
CTGCACACGA TGTACGGTCA GGCGCTGCGC CACTCGGCTG AGTTCTACAT CGAGTTCTTC
GCCATCGACC TGATCATGGA CGATCAGGGC TGCTGCCGCG GCGTCGTGGC GCTGAAGCTC
GACGACGGCA CCATCCATCG TTTCAAGGCG CAGACCACCA TTCTGGCGAC CGGCGGCTAC
GGCCGTGCCT ACGCCTCCTG CACGTCGGCG CACACCTGCA CCGGCGACGG CGGCGCGATG
GCGTTGCGCG CCGGCCTGCC GCTGCAGGAC ATGGAGTTCG TTCAGTTCCA CCCGACCGGC
ATCTACGGCT CGGGCTGTCT GGTGACCGAA GGCGCCCGCG GCGAGGGTGG CTATCTGGTC
AACTCCGAGG GCGAGCGCTT CATGGAGCGC TATGCGCCGT CGGCCAAGGA CCTCGCCTCG
CGCGATGTCG TTTCGCGCGC AATGACCATC GAAATGCGCG AAGGTCGCGG CGTCGGCAAG
AAGAAGGACC ACATCTTCCT GCACCTCGAC CATCTGGCGC CGGAAGTGCT GCACGAGCGG
CTGCCGGGCA TCTCGGAATC GGCACGGATC TTCGCCGGCG TCGACGTCAC CCGCGAGCCG
ATCCCGATCC TGCCGACCGT GCACTACAAC ATGGGCGGCA TCCCGACGAA CTTCCACGGC
GAAGTCGTGA CCAAGAAGGA CGGCGACGAC AACGCAGTGG TGCCGGGCCT GATGGCGATT
GGCGAAGCGG CCTGCGTGTC GGTGCACGGC GCCAACCGCC TCGGTTCCAA CTCGCTGATC
GACCTCGTGG TGTTCGGCCG CGCCGCAGCG CTGCGCTGCG CCGAGAAGCT GGTGCCGAAC
GGCAAGCAGC CTGAACTGCC GGCCAGCTCC GCCGACATGT CGCTGTCGCG GCTCGACAAG
TATCGTTACG CCAAGGGCGG CACCCCGACC GCCAAGCTGC GCGAGCGGAT GCAGCACGTG
ATGCAGAACA ACTGCGCGGT GTTCCGCACC GGCGAAGTGC TCGCCGAGGG CAAGGAACTG
ATCGCCAACG TCCATGGCAG CGTCGGCGAC GTCGGCGTGT CGGATCGCAC GCTGGTGTGG
AATTCCGATC TCGTCGAGAC ACTGGAATTC GACAATCTGA TCGTCCAGGC GGTGGTGACG
ATGAACTCCG CCGCCAACCG CACCGAGAGC CGCGGCGCCC ACGCCCGCGA AGACTTCCCG
GATCGCGATG ACGCCAACTG GATGAAGCAC ACGCTGGCCT GGATCGGTGA CAAGGGCGAC
GTGACCATCG ATTATCGGCC GGTGCACGAC TACACGATGA CCAACGACGT CCAGTACATT
CCGCCGAAGC CGCGGGTGTA TTGA
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| Protein sequence | MAANVNGAPA AGGYAYPIED HTYDVVVVGA GGAGLRAVVG CSEAGLRTAC ITKVFPTRSH
TVAAQGGISA SLGNMHKDDW RWHMYDTVKG SDWLGDQDSI EYMVRNAPEA VYELEHWGVP
FSRTEDGKIY QRPFGGMTMD FGKGQAQRTC AAADRTGHAM LHTMYGQALR HSAEFYIEFF
AIDLIMDDQG CCRGVVALKL DDGTIHRFKA QTTILATGGY GRAYASCTSA HTCTGDGGAM
ALRAGLPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NSEGERFMER YAPSAKDLAS
RDVVSRAMTI EMREGRGVGK KKDHIFLHLD HLAPEVLHER LPGISESARI FAGVDVTREP
IPILPTVHYN MGGIPTNFHG EVVTKKDGDD NAVVPGLMAI GEAACVSVHG ANRLGSNSLI
DLVVFGRAAA LRCAEKLVPN GKQPELPASS ADMSLSRLDK YRYAKGGTPT AKLRERMQHV
MQNNCAVFRT GEVLAEGKEL IANVHGSVGD VGVSDRTLVW NSDLVETLEF DNLIVQAVVT
MNSAANRTES RGAHAREDFP DRDDANWMKH TLAWIGDKGD VTIDYRPVHD YTMTNDVQYI
PPKPRVY
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