Gene Rpal_0103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0103 
Symbol 
ID6407746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp112368 
End bp113366 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content67% 
IMG OID642710012 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001989141 
Protein GI192288536 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.524808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCCGG TCCTATCAGT CGAGAATCTC AGCGTCAGCA TGACCAATCG CGACGGCGAT 
CTGGTGCCGG TGCTGGAGAA TCTGTCTTTC ACGGTTCAAA AGAGCCGCAC CATCGCGCTG 
GTCGGCGAAT CCGGCTGCGG CAAGAGCATG ACGGCGCTGG CGATCATGCG GCTCCTGCCG 
GAAGGCTTCG TGGTCACCGG CGGGCGCATC GTGCTCGACG GCGAGGATCT GCTCACCGCG 
CGGCCGAAGC GGATGCGGGC GTTGCGGGGC GACGCGATGT CGATGGTGTT CCAGGAGCCG 
ATGACAGCGC TGAACCCGCT CTACACCGTC GGCGATCAGA TCGCCGAGGT GCTGTATTAT 
CACCGCCGGC TCAGCCGCAA GGATGCCGCC GAGCAGGCGG TGCAGTTCCT CAAAGCGGTG 
CAGATCCCGG CCGCCGAGCA GCGCGCCAAG GCCTATCCGC ATCAGATGTC CGGCGGCATG 
CGGCAGCGGG TGATGATTGC GATGGCGCTC GCGTGCCGGC CGAAGCTTTT GATCGCCGAC 
GAGCCGACCA CTGCGCTCGA CGTCACGGTG CAGGCGCAGA TCTTCGACTT GCTCGCCCAG 
CTCCAGGACG AGACCGAAGC TGCGATCGTG TTGATCACCC ACGATCTCGG CGCGGTCGCT 
GAACTCGCCT ACGATATCGC CGTGCTCTAT GCCGGTCGCT GCATCGAGAC CGGGCCGGCG 
CATGAGATCG CGGCGCGGCC GCGCCATCCC TATACGCGCG GCCTGCTCGG CTGCGTGCCG 
CATCTGACCG TCGGTGTCGC CAAGCCGGAG GAGTGGGTCG ATCTCGGCGA GATTCCCGGC 
ATGGTGCCGG CGCTCGGCAA TCGTGGGCCG GATTGCGCAT TCCTGGCGCG CTGCGCCAAT 
GCCTCGGAGG CATGTCGGTC GCGACCGCAG CCGCCGCTTG GGACGATCGC CGCGGGTCAT 
GCGGTGTCGT GCTGGCGTGC CGAGGAGATC GCCGCATGA
 
Protein sequence
MAPVLSVENL SVSMTNRDGD LVPVLENLSF TVQKSRTIAL VGESGCGKSM TALAIMRLLP 
EGFVVTGGRI VLDGEDLLTA RPKRMRALRG DAMSMVFQEP MTALNPLYTV GDQIAEVLYY 
HRRLSRKDAA EQAVQFLKAV QIPAAEQRAK AYPHQMSGGM RQRVMIAMAL ACRPKLLIAD 
EPTTALDVTV QAQIFDLLAQ LQDETEAAIV LITHDLGAVA ELAYDIAVLY AGRCIETGPA 
HEIAARPRHP YTRGLLGCVP HLTVGVAKPE EWVDLGEIPG MVPALGNRGP DCAFLARCAN 
ASEACRSRPQ PPLGTIAAGH AVSCWRAEEI AA