Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0100 |
Symbol | |
ID | 6407743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 107472 |
End bp | 110621 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642710009 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_001989138 |
Protein GI | 192288533 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATCGCCG ATACCTTCAT CGACCGGCCA CGGCTCGCCG CGGTCATCGC GCTGGTGACC ACGCTGGTCG GCGCCCTGGC GCTGCTGCGC ATTCCGGTGG CCCAGCTCCC GGACATCGTC CCGCCGCAGG TCCGGGTGTC GACGACCTAT CCCGGCGCTT CCGCCGAGGT GCTGGAATCA ACCGTGGCGC AGCCGATCGA GGCCAAGGTC GTCGGCGTCG ACAAAATGAT CTACATGAAG AGTTCGAGCG GCAACGACGG CTCCTATACG CTCGACGTCT CGTTCGCGCT CGGCACCAAC CCCGACATCA ACACCGTCAA CGTCAACAAC CGCGTGCAGA ATGCGCTGTC GCAGCTTCCG TCCGAGGTAC GGCTGCAGGG CGTGACCGTG CAGAAGCGCT CGTCGTCGAT GCTGCAGGTC ATCAACATGT CCAGCACGGG GCAGAAATAC GACCAGCTGT TCCTGACCAA TTATGGCCTG ATCAACGTGC TGGACGAACT GGCCCGTGTG CCCGGCGTCG GTGAGGCGGC GCTATTCGGC CGCTATGCCT ATTCGATGCG GATCTGGTTC GACATCGAAA AGCTATCGAG CCTGGGCCTG GTGCCGTCCG ACGTCGTCGC CGCGATCAGC GCCCAGAACG TGCAGGCGCC GGTCGGGCGG ATCGGCGCGC GCCCGGTGCC CGACGACCAG AAATTCCAGT TCAACCTGCA GACCCAGGGC CGGCTGACCA AGCCGGAGGA GTTCGGCGCC ATCGTGCTGC GCGCCAACGC CGACGGTTCG GTGTTGAAGG TCTCCGACGT CGCCCGCGTC GAGCTCGGTG CGCAAAACGC CGATACCTAT GCGCGGCTGA ACGGCGATCC GACCATCGGC ATCGGCATCT TCCTCGCGCC CGGCGCCAAC GCCATCAACA CCGCCGCCGC GATCAATGCC AAGCTCGACA CGCTGCGGCC GCGTTTTCCG GAGAGCGTGC AGGCACGCGT GGTCTACGAC GCCACCGTGT TCGTCAACGA CACCATCAGC GCCGTGCTGC ACACCCTGTT CGAAGCCTTC GCGCTGGTCG CCGTGGTCGT GTTCCTGTTT CTCGGCAATC TCCGCGCCAC GCTGATCCCG ATCATCGCGG TGCCGGTCAG CCTGATCGGC ACCTTCGCGG TGCTGATCGC GTTCGGCACC TCGGTCAACA CCGTGTCGAT GCTGGCGCTG GTGCTGGCGA TCGGCATCGT CGTCGACGAC GCCATCGTCG TGGTCGAGAA CGTCGAGCGG GTCATGGAAG AAGAGCCGGA GCTGTCGCCG GCCGACGCCA CCAAGAAGGC GATGGCACAG GTCACCGCGC CGATCATCGC CATCACGCTG GTGCTGCTGT CGGTATTCGT GCCGATCGGC TTCCTGCCCG GCATCATGGG CGAATTGTTC CGGCAGTTCG CGGTGACGAT CTCGGCCGCG ATGCTGATCT CGGCGGTCAA CGCGCTGACG CTGTCGCCGG CGATGTGCGC GCTGTTCCTG CGCCACGAAG GGCAACGCCG CGGCTTCATG CAGAAGGTCG GCCGCGGCAT CGACCGCGCG CGGGACGGCT ACACCTCGAC GGTGCGGATC GCGCTGCGCC GGCCGGCGCT GTCGGTGCTG GCGGTGGCGG CCTGCGGCGC CGGCATCTGG GGGCTGTCGC TGACGACGCC GAGCGGGTTT CTTCCCGAAG AGGATCAGGG CGCCTTCTTC ATCAACGTGC AGCTCCCCGA CGGCGCTTCG GTGGCGCGCA CCGAGGCGAC GGTGATCGAG GTGGAAAAGA TCGTCAAGCA GATGCCGGAA GTGCGCGACG TGCTGTCGAT CGTCGGGCTG TCGCTGCTCG ACAACTACTC GGCCTCCAAC AACGCCTTCA TGATCGTGCA GCTCAAGCCG TTCGCCGATC GCAAGGCCGC GTCGTCGTCG GCGCAGACGC TGATCGGCAA GACTTTCGGC GCGACCCAGG CGGTGCGCAC CGCGACCGTG CTGCCGTTCA ACCTGCCGCC GGTCGTCGGC CTGTCCACTG CCGGCGGTTT CCAGTATCAG CTCGAATCGC TGGAAGGCGC CGAGCCGGCG GCGATCGCCG GCGTGACCAA CGGGCTGGTC GCCGCCGGCA ACCAGAACCC GCTGCTCACC CGGGTGTTCT CGACCTACAA CGCCAATGCG CCGTCGCTGT ATCTCGACAT CGACCGCGAG AAAGCGCAGT CGCTCGGCAT CACCATCAAC GACATCTTCT CGGCGCTGCA GATCTCGCTC GGCGGGCTCT ACATCAACAA CTTCAACCTG TTCGGACGGA CCTGGCAGGT CAACCTGCAG GGCGACGCGA GCGCGCGGCG TGACCTCCCC AACCTGTGGG ACATCTACGT CCGCAACACC AAGGGCGCGA TGGTGCCGCT GCAATCGATC GCAACCGTCC GCACCGTCAC CGGCCCGGCG GTGATCACCC GCTACAACAA TTATCGTTCG GTGACGATCA ACGGCTCCCC CGCACCCGGC GTCTCCTCGG GCACCGCGAT GGCCGCGATG GCCGAGGTGT CGGCCAAGAC GCTGCCGCCC GGCTACGCGT TCGAATGGAC CGGCACCGCC TATCAGGAGC ACGAGGCGGT CGGCAAGACC GGCTACATCC TGGCGCTCGC GGTGATCTTC GCATACCTGT TCCTGGTGGC GCTGTACGAA AGCTGGGTGA TCCCGGTGCC GGTGCTGCTG TCGGTGTCGA TCGCGGTGCT CGGCGCCTTC GCCGGCATCC TGGTCGGCCG CGTCACCCTC GATCTCTACG CCCAGATCGG CCTTGTGGTG TTGATCGCCC TCGCCGCCAA GAACGGCATC CTGATCGTCG AATTCGCCAA GGAGCAGCGC GAGGCCGGGC TGTCGATCAA GGCTGCGGCC GAGATGGGAG CCAAGCTGCG CTTTCGCGCC GTGATGATGA CCTCGATCGC CTTCATCCTC GGCCTGGTGC CGCTGGTGTG GGCCGACGGC GCGGCGATGC TGGCGCGGCG CAATCTGTCG ACGCCGGTGT TCGCCGGGAT GCTGACCGCC AGCCTGATCG GCATCATCCT GATTCCGATG CTGTACGTGG TGTTCCAGTC GCTGCGCGAG AAAGTCGCCG AGCCGGGCGT GCTGACGCCG CTGTCGCTGA AACGTCTGCT GAAGCGATGA
|
Protein sequence | MIADTFIDRP RLAAVIALVT TLVGALALLR IPVAQLPDIV PPQVRVSTTY PGASAEVLES TVAQPIEAKV VGVDKMIYMK SSSGNDGSYT LDVSFALGTN PDINTVNVNN RVQNALSQLP SEVRLQGVTV QKRSSSMLQV INMSSTGQKY DQLFLTNYGL INVLDELARV PGVGEAALFG RYAYSMRIWF DIEKLSSLGL VPSDVVAAIS AQNVQAPVGR IGARPVPDDQ KFQFNLQTQG RLTKPEEFGA IVLRANADGS VLKVSDVARV ELGAQNADTY ARLNGDPTIG IGIFLAPGAN AINTAAAINA KLDTLRPRFP ESVQARVVYD ATVFVNDTIS AVLHTLFEAF ALVAVVVFLF LGNLRATLIP IIAVPVSLIG TFAVLIAFGT SVNTVSMLAL VLAIGIVVDD AIVVVENVER VMEEEPELSP ADATKKAMAQ VTAPIIAITL VLLSVFVPIG FLPGIMGELF RQFAVTISAA MLISAVNALT LSPAMCALFL RHEGQRRGFM QKVGRGIDRA RDGYTSTVRI ALRRPALSVL AVAACGAGIW GLSLTTPSGF LPEEDQGAFF INVQLPDGAS VARTEATVIE VEKIVKQMPE VRDVLSIVGL SLLDNYSASN NAFMIVQLKP FADRKAASSS AQTLIGKTFG ATQAVRTATV LPFNLPPVVG LSTAGGFQYQ LESLEGAEPA AIAGVTNGLV AAGNQNPLLT RVFSTYNANA PSLYLDIDRE KAQSLGITIN DIFSALQISL GGLYINNFNL FGRTWQVNLQ GDASARRDLP NLWDIYVRNT KGAMVPLQSI ATVRTVTGPA VITRYNNYRS VTINGSPAPG VSSGTAMAAM AEVSAKTLPP GYAFEWTGTA YQEHEAVGKT GYILALAVIF AYLFLVALYE SWVIPVPVLL SVSIAVLGAF AGILVGRVTL DLYAQIGLVV LIALAAKNGI LIVEFAKEQR EAGLSIKAAA EMGAKLRFRA VMMTSIAFIL GLVPLVWADG AAMLARRNLS TPVFAGMLTA SLIGIILIPM LYVVFQSLRE KVAEPGVLTP LSLKRLLKR
|
| |