| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0077 |
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| Symbol | |
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| ID | 6407720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 79925 |
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| End bp | 83410 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642709986 |
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| Product | double-strand break repair helicase AddA |
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| Protein accession | YP_001989115 |
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| Protein GI | 192288510 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.458203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCC TCATTCCCAA CGAAGCCCGC GCCCGGCAGG AGATCGCCTC CGATCCATCG
GCATCAGTGT TCGTTTCCGC CAATGCCGGC TCGGGTAAGA CCCATGTGCT GGTTCAGCGC
GTGATCCGGC TGCTGCTCGA TGGCGTATCG CCGGAGCGCA TCCTTTGTAT CACCTTCACC
AAGGCGGCGG CCGCCAACAT GGCGGAGCGG GTGTTCACCA CGCTCGGTCA CTGGGTGAAG
CTCGACGACG AGGAACTGTC AGCGGCGATC CACGCCACCG GCGTGAAGAC GGTCGGGCCC
TCACTGCTAG CGCAGGCGCG AAAACTGTTC GCCTGTGCGC TTGAGACGCC GGGTGGGCTG
AAGGTGCAGA CCATCCACGC GCTGTGCACG CGGTTGCTGC AGCAGTTTCC GTTCGAGGCC
AATGTGCCGG CGCGGTTCAG CGTGCTCGAC GATCGCGATC AGGCCGAGCT GATGCAGCGC
GCCAGCCTCG ACGTGTTGCT GCGCGCCGCT GCGGCGCCGG ATAGCGATGC CGGGCGTGCA
CTGGCGTTTG CGATGACCAG CGCTGCCGAC GTCACCTTCC GCGACGTGGT GCAGGAAGCC
TGCATGAGCC GCGACCGGTT CATGGCGTGG GTGGCGCAGG CCGGCAGCGT CGAGCGCGCA
ATGGCACAAT TGTCTGCTAC CCTCGGCGTT GCGCCGGGTG ATAGCTGCGA AGCGGCCGAT
CGCGACATCG TCGATGGGCC GAACCTGCCG CGATCGGAAT GGGCTGCGGT CGCGGCGATC
TTCGAAGGCG GCAGCGCTAA CGACCAGGCG CAGGCTCGGC GGTTGCGCGA GGCGCTGGCG
CTCACTGATG CGGCGCAGAT CGATGCCTAT CTCCAGGTGT TCTTCACCAA GGATAGCGGC
CTGCGCAAAA GCCTGATCAC CAAAAAGCTC GGCGACTCAG CGCCCGGCCT CGCCGAAAGG
CTGCAGCGCG AAGGCGCGCG GCTCGCCGGG CTGCTCGAAC GCCGCCGCGC GCTGGCTTTG
CGCGAGCGCA CACGGGCGCT GCTGGTGATT GCCGCGCAGG TTGCGGGCAA CATCGCGCGT
GAGAAGCGCG AACGCGGTCT GCTTGATTAC GACGACCTGA TCGACAAGAC GCTGGCAATG
CTCGACAGCG GCGCGGCCGG GTGGGTGCAT TTCAAGCTCG ACCGCGGCGT CGATCACGTG
CTGATCGACG AGGCGCAGGA CACGTCGCCG AAGCAGTGGA AGATCGTCGC CCGGCTGATC
GACGAATTCA CCGCCGGCGA GGGCGCCCGC GATGGTGTCC GGCGCACCAT CTTTGCGGTC
GGTGACGAGA AGCAGTCAAT CTTCTCGTTT CAGGGCGCGG TGCCGAAGGA ATTCGCCGAG
TGGCGCGACC TGCTGCAGCG GCGGTTCACC GGCGCCGGCC TGACGTTCGA AAAGGTTTCG
TTCAACTACT CGTTCCGCTC AGGTGCCGCG ATCCTGCAGT CGGTCGATCA CGTGTTCCGC
GATCCGGCGA TCTATCGCAG CATCCACGCG GATTCGACCT ATCCGCTGCA TCAGTCGCTC
GCCGATGCCG GGCCGAGCTC GATCGATCTA TGGCCGCTGG AAGTGCCGGA TGATCGCCAG
CAGATCGAAG GTTGGCAGGC GCCGTTCGAC GCGGTGTCCG AAACCAGTCC CGAGGTCCGG
CTTGCCGACA AGGTGCGGGC CGAGATCGGC GCGCTGATTG CGCGCGGCAC CCAGACCGGT
CCGATGGGGC GTCGCCGGCC GCTGAGCTAT GGCGATGTGC TGATCCTGGT GCGGCGGCGC
GGCTCCGCGT TCGACGCGGT GATCCAGGCA CTGAAGCGCG GCGGCATCCC GGTCGCCGGC
GCCGACCGGC TGAAGCTGAC TGAGCACATC GCGATCATCG ACCTGATGAA GCTCGCCGAC
GCGCTGCTGC TGCCGCAGGA CGATCTGGCA CTCGCAGTGG CGCTGAAGAG CCCGCTGTTC
GGGCTCGATG ACGACGACCT GTTCAAGCTG GCCTGGCAGC GCAAGGGCTC GCTAAGCGCT
GCGCTGGCCG ATCATGCCGC AGGCGATTCG AAGTTTGCGG CCGTGCAGCG CCGGCTGGAG
AGCTACGCGG CACGGGCGCA GGCCGAAACG CCGTTCGGGT TCTATGCCTG GCTGCTCGGC
GGCGATGGCA GCGACAGCGG CCGCGCCCGG ATCCTGCGCC GGCTCGGGCC GGAGGCCAAC
GACGCGCTCG ACGAGTTTCT CGAACTGGCG CTGAGCTTCG AGCAGAAGCG CGCGCCGTCG
CTGCAAGGCT TTGTGGCGTG GCTGCGTGAA GCCGACACCG AGATCAAGCG TGACATGGAG
ATCTCCCGCG ACGAAGTCCG GGTGATGACG GTGCACGGCG CCAAGGGTCT GGAAGCGCCG
GTGGTGTTCC TGATCGACAC CACCTCGTCG CCGGCCGACA CCCAGCGGCT CAACCTGATC
CGGCTGCCGG GTGGCAACGC TGCGCCGGGC TCGGTCGCCG CGATGGTGTG GGCGGGTCGC
AAGGCCGACG ATCCCCACAT CGTCGAGCAG GCGCGCAGCG CCATGATCGA GGAGACCGAG
GACGAGTATC GCCGGCTGCT TTATGTCGCG ATGACCCGCG CGGCCGACCG GCTGATCGTC
GGCGGCTGCA TGCCGGGCAA CCGCAACGAG GTGCGGCCGC ACTCCTGGTA CGACCTGATC
AGCAAGGGGC TGGAATCATC CGGGCTGGTG ATGCAGCCGG TCCCGCCGGA GGGCGTGATC
AAGCGCTACT GCCGCCCGGA GGATGTGATC GAGGAGATCG GGACGGTCTC GCAGGGGCAA
GAGCTGGCGG TGACGCATCT GCCGGACTGG TTGCGCCGCC CGGCGCCCGG CTTACCATCC
GCCGAGCAGG TGCTGCGGCC GTCGGATGCC GAAGACGATG ATCGGCGCCG GCTGCGGCCA
GGAGAGTCCG ACGCCAGCCG CAGCCGCGCG CTGCAGCGTG GCACGTTGGT GCATCGGCTG
CTGCAATCGC TGCCGGAGAT CGCCGTTGCC GATCGTCCCG CCGCCGCTGG ACGGTTCCTC
GCTCGCAATG CGTCGGATTG GAGTGAGGAG GATCGGGCGG CGCTCGCCGC TCAGGTGCTC
GGGCTGATTG CCGATGCGAG GTTTGCGGCG GTGTTCGGCT CAGGCAGCCG AGCCGAGGTG
CCGATCGTCG GCCGGCTGCA GTGGCGCGGC GGGCCGGTGC TGGTGTCCGG CCAGATCGAC
CGCCTGGTAG TGACCGAGAC CGAGGTTCTG ATCGTCGACT ACAAGACCAA CCACGCCCCG
CCGCGGGTTG AGGCCGAGGC GCCGCGCAGT TACGTCCGTC AGCTCGCCCG CTACCGGGCG
GTGCTCGGCG CGATCTATCC ACAGCGCACC GTCCGGGCCG CCCTGCTCTG GACCGAAGCG
GCTGAAATCA TGGAGCTTTC GGCCTCTGCG CTGGACGCGG AGCAGGCCGA TCTGACGGTG
CCGTGA
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| Protein sequence | MSRLIPNEAR ARQEIASDPS ASVFVSANAG SGKTHVLVQR VIRLLLDGVS PERILCITFT
KAAAANMAER VFTTLGHWVK LDDEELSAAI HATGVKTVGP SLLAQARKLF ACALETPGGL
KVQTIHALCT RLLQQFPFEA NVPARFSVLD DRDQAELMQR ASLDVLLRAA AAPDSDAGRA
LAFAMTSAAD VTFRDVVQEA CMSRDRFMAW VAQAGSVERA MAQLSATLGV APGDSCEAAD
RDIVDGPNLP RSEWAAVAAI FEGGSANDQA QARRLREALA LTDAAQIDAY LQVFFTKDSG
LRKSLITKKL GDSAPGLAER LQREGARLAG LLERRRALAL RERTRALLVI AAQVAGNIAR
EKRERGLLDY DDLIDKTLAM LDSGAAGWVH FKLDRGVDHV LIDEAQDTSP KQWKIVARLI
DEFTAGEGAR DGVRRTIFAV GDEKQSIFSF QGAVPKEFAE WRDLLQRRFT GAGLTFEKVS
FNYSFRSGAA ILQSVDHVFR DPAIYRSIHA DSTYPLHQSL ADAGPSSIDL WPLEVPDDRQ
QIEGWQAPFD AVSETSPEVR LADKVRAEIG ALIARGTQTG PMGRRRPLSY GDVLILVRRR
GSAFDAVIQA LKRGGIPVAG ADRLKLTEHI AIIDLMKLAD ALLLPQDDLA LAVALKSPLF
GLDDDDLFKL AWQRKGSLSA ALADHAAGDS KFAAVQRRLE SYAARAQAET PFGFYAWLLG
GDGSDSGRAR ILRRLGPEAN DALDEFLELA LSFEQKRAPS LQGFVAWLRE ADTEIKRDME
ISRDEVRVMT VHGAKGLEAP VVFLIDTTSS PADTQRLNLI RLPGGNAAPG SVAAMVWAGR
KADDPHIVEQ ARSAMIEETE DEYRRLLYVA MTRAADRLIV GGCMPGNRNE VRPHSWYDLI
SKGLESSGLV MQPVPPEGVI KRYCRPEDVI EEIGTVSQGQ ELAVTHLPDW LRRPAPGLPS
AEQVLRPSDA EDDDRRRLRP GESDASRSRA LQRGTLVHRL LQSLPEIAVA DRPAAAGRFL
ARNASDWSEE DRAALAAQVL GLIADARFAA VFGSGSRAEV PIVGRLQWRG GPVLVSGQID
RLVVTETEVL IVDYKTNHAP PRVEAEAPRS YVRQLARYRA VLGAIYPQRT VRAALLWTEA
AEIMELSASA LDAEQADLTV P
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