| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0027 |
|---|
| Symbol | |
|---|
| ID | 6407668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 28765 |
|---|
| End bp | 30162 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642709934 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001989065 |
|---|
| Protein GI | 192288460 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2270] Permeases of the major facilitator superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.453112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCAT CGCTTGCGGA AGGCATCGCG CAAACTCGTG AACCGATCCG CTATCCGCCA
CAGAGCGCCG TCGTCGGTTG GATCTTGTTC GACTGGGCGG CGCAACCTTA CTTCACGCTG
ATCACCACCT TCATTTTCGC GCCCTATTTC GCCACCTACG TGGCCCCCGA TCCGGCAACC
GGCCAATCGC TATGGGGGTT CGCCACCGCG GCAAGCGGTT TCGTCATCGC TTTGGCGTCG
CCGGTGCTCG GCGCGATCGC CGATGCCAGC GGTCGCCGCA AGCCGTGGAT CGCGCTGTTC
GGCGGCATGC TGGTGATCGG ATCGATGCTG ATGTGGTTCG GCAAGCCAGG CGAACCGAAT
ACGATTCTCC CCCTGCTGAT CGCCTACGCA CTCGCCACCA TCGGGGTTGA ATTCGCCACC
GTGTTCAACA ACGCCATGAT GCCCAACTTG GTGCCGCCGG AGAAGATCGG CCGCCTATCG
GGCACCGGCT GGGCGACCGG CTATGTCGGC GGCATCCTGT CGTTGATCCT GGTCCTCGGC
TTCCTCGCCG CCAGCCCGGA GACCGGCAAG ACGCTGCTCG GCATCACGCC GTGGTTCGGA
CTCGACCCGG CGCTGCATGA AGGCGACCGC ATCAGCGGCC CGCTCACCGG GATGTGGTTC
GTGGTGTTCG TGCTGCCGAT GTTTCTGCTG ACACCGGATT TCCCCGCCAA GCTCGCGCCG
CGCGCCGCGA TCCGCGAGGG CCTGCGAGAA CTCGGCGAGA CGCTGCGCGA CCTACCGCGG
CGGCGTTCGC TGGCGATCTT CCTACTCGCC AACATGATCT ACACTGACGG CTTGGTGTCG
CTGTTCGCAT TCGGCGGCAT CTACGCCACC GGCACCTTCG GCTGGAGCAC GATCCAGATC
GGCACCTTCG GCGTCATCCT GGCAATCGCC GCCACCATCG GCGCCTTCAC CGGCGGACGC
CTCGACGATG CATTCGGCTC CAAACGAGTG ATCACCGGCT CACTGCTGCT CCTGCTGGTC
GCGATCGCCG GCATCCTGCT GATCGATCCG AGCCACGTGC TGCTGATCGA GGTGACGCCG
CCGCAACCGG GCGCAGCGCT GTTCGCATCA CCTGCCGAAC GCGCCTACCT GCTGCTCGGC
TGCCTGATCG GCATCGCTGG CGGCCCGCTG CAGGCCGCAT CGCGCACGCT GCTGATCAGG
ATCGCCCCAC GGGACCGGAT CGCGCAGTAT TTCGGCCTGT TCGCTCTCAC CGGGAAGGTC
ACCTCGTTCA TCGGTCCGCT GCTGATCGCG AGTGTCACGG CGCTGGCGAG CAGCCAGAAG
GCCGGTATGG CCGTGCTGGT GCTGTTCTTC GTCGCCGGAT TGGCGCTGCT GACCCAGGTC
CGGCGCTCGG CGGACTGA
|
|---|
| Protein sequence | MSSSLAEGIA QTREPIRYPP QSAVVGWILF DWAAQPYFTL ITTFIFAPYF ATYVAPDPAT
GQSLWGFATA ASGFVIALAS PVLGAIADAS GRRKPWIALF GGMLVIGSML MWFGKPGEPN
TILPLLIAYA LATIGVEFAT VFNNAMMPNL VPPEKIGRLS GTGWATGYVG GILSLILVLG
FLAASPETGK TLLGITPWFG LDPALHEGDR ISGPLTGMWF VVFVLPMFLL TPDFPAKLAP
RAAIREGLRE LGETLRDLPR RRSLAIFLLA NMIYTDGLVS LFAFGGIYAT GTFGWSTIQI
GTFGVILAIA ATIGAFTGGR LDDAFGSKRV ITGSLLLLLV AIAGILLIDP SHVLLIEVTP
PQPGAALFAS PAERAYLLLG CLIGIAGGPL QAASRTLLIR IAPRDRIAQY FGLFALTGKV
TSFIGPLLIA SVTALASSQK AGMAVLVLFF VAGLALLTQV RRSAD
|
|---|
| |