Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_4189 |
Symbol | |
ID | 5211173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 5247270 |
End bp | 5248556 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640597778 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001278483 |
Protein GI | 148658278 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00377] anti-anti-sigma factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000679447 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACCATGA CAAACGGGAA AATCGCCGCG ATTGAAGCCG AAAACGCCAT GCTGCGTCAG CGCATCAGCG AGTTGGAAGC CCAACTGACC TCCCGCAACG ACCATATCGC CCCGTCCAAC CATCAAGAGA TCGAGGAATT TCGCGGTTTT CGCACGCTCA TCGAAACGGC GCCGCAAGCC ATCGGCATCA TCACCCTCGA TGGCGTCATC ACCTATGCGA ATGCTGCATT CTGCTCACTG ATCGGCTACG ACACGCTGAT TGGCGCACAT ATGACGATGT TGCACTTCGA GGAAGATCTG CCAGTATTGC AGGCAAGTCT GCAGGACGTG ATGCACCACG GCGTCTGGCG CGGCGTCGCG CGCCTGCGCC GACGCGACGG CAGCGCCATT CCGGTGCGGA TCAACGCCTT CGTCATCCGC GACGACGATG GGCAGCCAAT GGCAATGACC GGCATGTTCG AAGACCTCAC CGAAGAACTC CGGCGCGAGG AGCGGCTCCG CCTGTTCGAG GCGCTGGTCG AAAACGCCCC CGATGCCATC GGTGTCGCCG ATTTCAAGGG CAACATCATC TACGCCAACG CTGCGTATCA GGCGTTGACC GGCTACGGCG AGCAACTGAT CGGAATGAAT GGCTTCGACT ATATTGTTGA AGAGGATCAT CGTTCAGCGC AGATCGCACT GGCACGCCTC GCCGAGGGGA AAGCAGCGTT TCTCGAGACG CACATCCGGC GCAAAGATGG CAGCATTGTG CCGGTGGCAT CGACGATGTA TGCGCAACCC GCGCCGGGCG GCGAGCTGCG GATCATTGGC TTCCTGCGCG ACATCAGTGA CCAGAAGCGC GCCGAGGCGG AACGCTTCGC GCTCCAGCAG CAGGTAATCG AGGCGCAGCG CGCCGCCATC CGCGAACTCT CCACCCCGCT CATTCCGATC AGCGAGACGG CGGTGATTAT GCCGCTGGTC GGCGCCATCG ACAGCGCGCG GGCGCAGCAG ATCATCGACA CCCTGCTCGA AGGGGTCGCC GCTCATCGCG CGGAGATGGC GATTGTTGAC ATCACCGGGG TGCAGGTGGT CGATACGCAG GTCGCCAATG CGCTGGTGCG CGCCGCGCAG GCGGTGCGGC TGCTGGGGGC GCAGGTGATC CTGACCGGCA TCAAGCCGCA GGTGGCGCAG ACGCTGGTGC AGCTGGGGGT CAGCCTGGAA GGCATCCGCA CCACCGGGTC ACTCCAGACC GGCGTGCGCC TGGCGTTGAC CGGGGATGCG ACGAAACACC GGAATGGCAA ACCATAG
|
Protein sequence | MTMTNGKIAA IEAENAMLRQ RISELEAQLT SRNDHIAPSN HQEIEEFRGF RTLIETAPQA IGIITLDGVI TYANAAFCSL IGYDTLIGAH MTMLHFEEDL PVLQASLQDV MHHGVWRGVA RLRRRDGSAI PVRINAFVIR DDDGQPMAMT GMFEDLTEEL RREERLRLFE ALVENAPDAI GVADFKGNII YANAAYQALT GYGEQLIGMN GFDYIVEEDH RSAQIALARL AEGKAAFLET HIRRKDGSIV PVASTMYAQP APGGELRIIG FLRDISDQKR AEAERFALQQ QVIEAQRAAI RELSTPLIPI SETAVIMPLV GAIDSARAQQ IIDTLLEGVA AHRAEMAIVD ITGVQVVDTQ VANALVRAAQ AVRLLGAQVI LTGIKPQVAQ TLVQLGVSLE GIRTTGSLQT GVRLALTGDA TKHRNGKP
|
| |