Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_4158 |
Symbol | |
ID | 5211142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 5206371 |
End bp | 5208041 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640597747 |
Product | anti-sigma-factor antagonist |
Protein accession | YP_001278452 |
Protein GI | 148658247 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.6446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATCA CATCTGCATC CAGGCACTCA TCACGCAGCC TCTCGCTGTT GCTCGCTCTT GCGCTGATCA GCCTGAGTGT GCTGTCGCTC TCGATCAGCA ATGCGTTGCA GGTCGCCTCG AACTGGCGGG TGCATCAGCG TGCGCTTGCT GCTCAGCAGC AGTCGCTTGC TCACGGGGTA GCCGTCGAGA CGCAAACGTT CCTCGATGCA CGCTGGAATA TGTTGAACAC AGCTATCAGG ATGTCCAATC TGGCGACTGC GCCGGTGGCG CATCGTATCG AGGCGCTGCA ACGCCTGCTC GCCCTCGATC CGTCGTTTGA ACAGTTGACG ATCCTGGATG ATAGACGCTT TGTCGTCGCG GCGGTCAGTC AGAATCGCCA GAGGACGCCC AACTTCCTCG ATACAGCGCT GGTCGAGGAG ATCATGCACC AGACAACGCT GCGGAATCGC TATGTCAGTT CACTGCGGAT CGATGGTGCG ACAGGTGAAC CGGGTATCAT CCTGGCGTTG CCACTGGTCG ATTCATTTGA AAACGATCAG GGCGCGCTGA TAGCGACGGT CAACGCCAGA TTTCTGTGGG ATGCCCTTAA GCGGCAGTTG CCCTTCCGTG AAGGGATCGC ATATATTGTC AACCGGGATG GCGATCTGCT GGCCTGCACC GACACTGCGC GCGTGCTACG CGGCGACACC GCCGTTGATA TCCCTGTGGT GCAGGCAGCA TTTGCCCATG ACCGCTCCGG CTCGTTCCAG ACCCTGCACT ATACCGGTCT CACCGGCATC GAGGTTGTTG GCAGTTACGA AGCGCTCCGA GAGCCAGCGT GGGCAGTAGT GGTCGAAGTG CCACGCACCG TCGCCTATCG TGATATTGTG AACGATATTG GCGTTTCAGC GCTTATTCTC CTGAGCGCGG CAGTCGTGTC CGGCGGTATT GGCGTCTACC TGGCGCGCTG GTTGTCGGCG CCGTTGCACC GTCTGACCCG CCTGGCGGAG CGTATCGCAG CGGGTGAGCG CGATCTGCGG GTTGCTGTGC GCGGTCCGCG TGAGGTGGAG ATACTTGCGC GCGCGTTCGA TACCATGACC ACGCAACTCG AACAGAACCT GGAGACGCTG GAACATCGGG TTGCGGAGCG AACTGCCGAT CTGCAAGCAG CGCTTGCCAG GGTTGAGGCG CAGGCGCAGG AGCAGGCGCG GTTGCTCGAA GAAATCGCGC AGCAGCGCCA GGCGATTCGA GAATTGAGCG TTCCGGTGCT GCCGGTGACC GATCAGGCGC TGGTGATGCC GCTGGTCGGC GCGATTGATA CCGAGCGGCT GGCGGATATT CAGGATCGGG CGCTGCACGC ATTGCAGCGG TCGCACGCAC GCTATCTGCT CGTCGATATC ACCGGCGTGC CGGTGGTCGA TAGTCAGGTT GCGCAAGGTT TGCTTGCGAT CAACGCCATG TGTCGGTTGC TGGGCGCCGA AATGGTGTTG ATCGGCATTC GCCCCGAAGT GGCGCAGACA ATTGTGGGCC TGGGGATGAA CCTGTCGTCG CTGCGAACCG CCGCCGACCT GCAGACGATA CTGGGTGAGA TCACCCGCCG GGATCAGGGT CGTGCAACGC GCAATGGCGC CGCGAACGGC GGCATCGCAC AGAACCATGC GTTCTTCGAT CTGTTCAGCA GCCGCGATTG A
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Protein sequence | MNITSASRHS SRSLSLLLAL ALISLSVLSL SISNALQVAS NWRVHQRALA AQQQSLAHGV AVETQTFLDA RWNMLNTAIR MSNLATAPVA HRIEALQRLL ALDPSFEQLT ILDDRRFVVA AVSQNRQRTP NFLDTALVEE IMHQTTLRNR YVSSLRIDGA TGEPGIILAL PLVDSFENDQ GALIATVNAR FLWDALKRQL PFREGIAYIV NRDGDLLACT DTARVLRGDT AVDIPVVQAA FAHDRSGSFQ TLHYTGLTGI EVVGSYEALR EPAWAVVVEV PRTVAYRDIV NDIGVSALIL LSAAVVSGGI GVYLARWLSA PLHRLTRLAE RIAAGERDLR VAVRGPREVE ILARAFDTMT TQLEQNLETL EHRVAERTAD LQAALARVEA QAQEQARLLE EIAQQRQAIR ELSVPVLPVT DQALVMPLVG AIDTERLADI QDRALHALQR SHARYLLVDI TGVPVVDSQV AQGLLAINAM CRLLGAEMVL IGIRPEVAQT IVGLGMNLSS LRTAADLQTI LGEITRRDQG RATRNGAANG GIAQNHAFFD LFSSRD
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